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  1. Antimony‏‎ (18:08, 21 July 2015)
  2. BioNetGen‏‎ (18:16, 21 July 2015)
  3. Tests‏‎ (11:13, 25 August 2015)
  4. Probes - Affymetrix miRNA-1-0‏‎ (12:18, 25 August 2015)
  5. CRISPR Cas9 and specific oligonucleotides (analysis)‏‎ (12:19, 25 August 2015)
  6. Binding regions summary (analysis)‏‎ (12:19, 25 August 2015)
  7. Cis-module identification (analysis)‏‎ (12:19, 25 August 2015)
  8. Cis-module sets near given genes (analysis)‏‎ (12:19, 25 August 2015)
  9. Convert files to tracks (analysis)‏‎ (12:19, 25 August 2015)
  10. Distinct TF classes (analysis)‏‎ (12:19, 25 August 2015)
  11. Count olig frequencies (analysis)‏‎ (12:19, 25 August 2015)
  12. Gathering genome statistics (analysis)‏‎ (12:19, 25 August 2015)
  13. Filtration of predicted sites by filters (analysis)‏‎ (12:19, 25 August 2015)
  14. Identification of cis-regulatory modules with given pattern of TF-classes (analysis)‏‎ (12:19, 25 August 2015)
  15. Identification of composite elements by filters (analysis)‏‎ (12:20, 25 August 2015)
  16. Merge binding regions for cell-lines (analysis)‏‎ (12:20, 25 August 2015)
  17. Peak finders comparison (analysis)‏‎ (12:20, 25 August 2015)
  18. Non-merged ChIP-Seq tracks summary (analysis)‏‎ (12:20, 25 August 2015)
  19. Multivariate regression analysis‏‎ (12:20, 25 August 2015)
  20. Multivariate sample analysis‏‎ (12:20, 25 August 2015)
  21. Two multivariate sample analysis‏‎ (12:20, 25 August 2015)
  22. Summary on AUCs (analysis)‏‎ (12:20, 25 August 2015)
  23. BioPAX file‏‎ (12:20, 25 August 2015)
  24. Data (host object)‏‎ (12:21, 25 August 2015)
  25. Transform (host object)‏‎ (12:21, 25 August 2015)
  26. Identify enriched motifs in promoters (TRANSFAC(R)) (workflow)‏‎ (12:22, 25 August 2015)
  27. Identify enriched motifs in tracks (TRANSFAC(R)) (workflow)‏‎ (12:22, 25 August 2015)
  28. Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow)‏‎ (12:22, 25 August 2015)
  29. Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow)‏‎ (12:22, 25 August 2015)
  30. Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow)‏‎ (12:22, 25 August 2015)
  31. Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow)‏‎ (12:22, 25 August 2015)
  32. Patient-specific cardiovascular model‏‎ (15:08, 25 September 2015)
  33. RADAU V‏‎ (15:06, 11 November 2015)
  34. Dormand-Prince‏‎ (15:08, 11 November 2015)
  35. BioUML workbench‏‎ (15:46, 29 September 2016)
  36. Presentations‏‎ (13:53, 18 October 2016)
  37. Muscle metabolism‏‎ (18:10, 25 November 2016)
  38. BioUML development roadmap‏‎ (14:56, 11 January 2017)
  39. Euler‏‎ (12:11, 10 February 2017)
  40. JVODE‏‎ (21:47, 12 February 2017)
  41. Simulation‏‎ (22:25, 12 February 2017)
  42. Substances - DrugBank‏‎ (18:58, 13 February 2017)
  43. Substances - KEGG‏‎ (18:58, 13 February 2017)
  44. Substances - CAS‏‎ (18:58, 13 February 2017)
  45. Proteins - Ensembl‏‎ (18:59, 13 February 2017)
  46. Genes - Ensembl‏‎ (18:59, 13 February 2017)
  47. Transcripts - Ensembl‏‎ (18:59, 13 February 2017)
  48. Proteins - Transpath isogroups‏‎ (18:59, 13 February 2017)
  49. Substances (reference type)‏‎ (18:59, 13 February 2017)
  50. Create custom project (analysis)‏‎ (18:59, 13 February 2017)
  51. Cluster analysis‏‎ (19:00, 13 February 2017)
  52. ChIP-Seq peaks clusterization (analysis)‏‎ (19:00, 13 February 2017)
  53. Create matrix by mixture of normal components (analysis)‏‎ (19:00, 13 February 2017)
  54. IPS prediction (analysis)‏‎ (19:00, 13 February 2017)
  55. Identical best site ROC-curves (analysis)‏‎ (19:00, 13 February 2017)
  56. IPS ROC-curves (analysis)‏‎ (19:00, 13 February 2017)
  57. Common and IPS scores correlation (analysis)‏‎ (19:00, 13 February 2017)
  58. Correlations of best sites (analysis)‏‎ (19:00, 13 February 2017)
  59. ChIP-Seq characteristics distribution (analysis)‏‎ (19:00, 13 February 2017)
  60. Locations of best sites (analysis)‏‎ (19:00, 13 February 2017)
  61. Matrix comparison (analysis)‏‎ (19:00, 13 February 2017)
  62. Mixture of normal components (analysis)‏‎ (19:00, 13 February 2017)
  63. Oligonucleotides in sequence samples (analysis)‏‎ (19:00, 13 February 2017)
  64. Matrix derivation (analysis)‏‎ (19:00, 13 February 2017)
  65. Prediction of TF-binding sites of given TF (analysis)‏‎ (19:00, 13 February 2017)
  66. ROC curves for best sites union (analysis)‏‎ (19:00, 13 February 2017)
  67. Ribo-Seq and mRNA features forming (analysis)‏‎ (19:00, 13 February 2017)
  68. ROC-curves in grouped peaks (analysis)‏‎ (19:00, 13 February 2017)
  69. ROC-curves in clusterized peaks (analysis)‏‎ (19:00, 13 February 2017)
  70. ROC-curves in overlapped ChIP-Seq peaks (analysis)‏‎ (19:00, 13 February 2017)
  71. Transform track to table (analysis)‏‎ (19:00, 13 February 2017)
  72. Univariate sample analysis‏‎ (19:00, 13 February 2017)
  73. Colon cancer signature (analysis)‏‎ (19:00, 13 February 2017)
  74. Univariate samples analysis‏‎ (19:00, 13 February 2017)
  75. BioUML format‏‎ (19:00, 13 February 2017)
  76. CellML (file format)‏‎ (19:00, 13 February 2017)
  77. Antimony (file format)‏‎ (19:00, 13 February 2017)
  78. BioNetGen language format‏‎ (19:01, 13 February 2017)
  79. GinSim (file format)‏‎ (19:01, 13 February 2017)
  80. SIF (file format)‏‎ (19:01, 13 February 2017)
  81. SBGN-ML (file format)‏‎ (19:01, 13 February 2017)
  82. SBML (file format)‏‎ (19:01, 13 February 2017)
  83. SBML(CellDesigner) (file format)‏‎ (19:01, 13 February 2017)
  84. SED-ML file‏‎ (19:01, 13 February 2017)
  85. Save network (analysis)‏‎ (19:01, 13 February 2017)
  86. Visualize results (analysis)‏‎ (19:01, 13 February 2017)
  87. Save hits (analysis)‏‎ (19:01, 13 February 2017)
  88. Simulate Population (analysis)‏‎ (19:01, 13 February 2017)
  89. Flux Balance Analysis (workflow)‏‎ (19:02, 13 February 2017)
  90. Quantification of RNA-seq in BAM format for mouse mm9 single end (workflow)‏‎ (19:02, 13 February 2017)
  91. Quantification of RNA-seq in FASTQ format for mouse mm9 single end (workflow)‏‎ (19:02, 13 February 2017)
  92. Identify enriched motifs in tissue specific tracks (TRANSFAC(R)) (workflow)‏‎ (19:02, 13 February 2017)
  93. Find master regulators in networks with context genes (TRANSPATH(R)) (workflow)‏‎ (19:02, 13 February 2017)
  94. Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow)‏‎ (19:02, 13 February 2017)
  95. Find 10 master regulators in networks (TRANSPATH(R)) (workflow)‏‎ (19:02, 13 February 2017)
  96. Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow)‏‎ (19:02, 13 February 2017)
  97. Find master regulators in mutated network (workflow)‏‎ (19:02, 13 February 2017)
  98. Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow)‏‎ (19:02, 13 February 2017)
  99. Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow)‏‎ (19:02, 13 February 2017)
  100. Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow)‏‎ (19:02, 13 February 2017)
  101. Biouml.plugins.chebi (plugin)‏‎ (19:02, 13 February 2017)
  102. Biouml.plugins.chipmunk (plugin)‏‎ (19:02, 13 February 2017)
  103. Biouml.plugins.bowtie (plugin)‏‎ (19:02, 13 February 2017)
  104. Biouml.plugins.agentmodeling (plugin)‏‎ (19:02, 13 February 2017)
  105. Biouml.plugins.agilent (plugin)‏‎ (19:02, 13 February 2017)
  106. Biouml.plugins.cellml (plugin)‏‎ (19:02, 13 February 2017)
  107. Biouml.plugins.creasemarks (plugin)‏‎ (19:02, 13 February 2017)
  108. Biouml.plugins.das (plugin)‏‎ (19:02, 13 February 2017)
  109. Biouml.plugins.download (plugin)‏‎ (19:02, 13 February 2017)
  110. Biouml.plugins.chemoinformatics (plugin)‏‎ (19:02, 13 February 2017)
  111. Biouml.plugins.antimony (plugin)‏‎ (19:02, 13 February 2017)
  112. Biouml.plugins.bionetgen (plugin)‏‎ (19:02, 13 February 2017)
  113. Biouml.plugins.dropbox (plugin)‏‎ (19:02, 13 February 2017)
  114. Biouml.plugins.endonet (plugin)‏‎ (19:02, 13 February 2017)
  115. Biouml.plugins.biopax (plugin)‏‎ (19:02, 13 February 2017)
  116. Biouml.plugins.expasy (plugin)‏‎ (19:02, 13 February 2017)
  117. Biouml.plugins.expression (plugin)‏‎ (19:02, 13 February 2017)
  118. Biouml.plugins.fbc (plugin)‏‎ (19:02, 13 February 2017)
  119. Biouml.plugins.modelreduction (plugin)‏‎ (19:03, 13 February 2017)
  120. Biouml.plugins.lucene (plugin)‏‎ (19:03, 13 February 2017)
  121. Biouml.plugins.matlab (plugin)‏‎ (19:03, 13 February 2017)
  122. Biouml.plugins.gxl (plugin)‏‎ (19:03, 13 February 2017)
  123. Biouml.plugins.geneways (plugin)‏‎ (19:03, 13 February 2017)
  124. Biouml.plugins.node (plugin)‏‎ (19:03, 13 February 2017)
  125. Biouml.plugins.microarray (plugin)‏‎ (19:03, 13 February 2017)
  126. Biouml.plugins.genemodels (plugin)‏‎ (19:03, 13 February 2017)
  127. Biouml.plugins.genenet (plugin)‏‎ (19:03, 13 February 2017)
  128. Biouml.plugins.hemodynamics (plugin)‏‎ (19:03, 13 February 2017)
  129. Biouml.plugins.glycan (plugin)‏‎ (19:03, 13 February 2017)
  130. Biouml.plugins.gne (plugin)‏‎ (19:03, 13 February 2017)
  131. Biouml.plugins.go (plugin)‏‎ (19:03, 13 February 2017)
  132. Biouml.plugins.googledrive (plugin)‏‎ (19:03, 13 February 2017)
  133. Biouml.plugins.kegg (plugin)‏‎ (19:03, 13 February 2017)
  134. Biouml.plugins.ginsim (plugin)‏‎ (19:03, 13 February 2017)
  135. Biouml.plugins.graphml (plugin)‏‎ (19:03, 13 February 2017)
  136. Biouml.plugins.miriam (plugin)‏‎ (19:03, 13 February 2017)
  137. Biouml.plugins.perfectosape (plugin)‏‎ (19:03, 13 February 2017)
  138. Biouml.plugins.proteinmodel (plugin)‏‎ (19:03, 13 February 2017)
  139. Biouml.plugins.obo (plugin)‏‎ (19:03, 13 February 2017)
  140. Biouml.plugins.optimization (plugin)‏‎ (19:03, 13 February 2017)
  141. Biouml.plugins.pass (plugin)‏‎ (19:03, 13 February 2017)
  142. Biouml.plugins.psimi (plugin)‏‎ (19:03, 13 February 2017)
  143. Biouml.plugins.reactome.biohub (plugin)‏‎ (19:03, 13 February 2017)
  144. Biouml.plugins.research (plugin)‏‎ (19:03, 13 February 2017)
  145. Biouml.plugins.riboseqArticleResult (plugin)‏‎ (19:03, 13 February 2017)
  146. Biouml.plugins.sabiork (plugin)‏‎ (19:03, 13 February 2017)
  147. Biouml.plugins.sbgn (plugin)‏‎ (19:03, 13 February 2017)
  148. Biouml.plugins.metabolics (plugin)‏‎ (19:03, 13 February 2017)
  149. Biouml.plugins.sbw (plugin)‏‎ (19:03, 13 February 2017)
  150. Biouml.plugins.svg (plugin)‏‎ (19:03, 13 February 2017)
  151. Biouml.workbench.graph (plugin)‏‎ (19:03, 13 February 2017)
  152. Com.developmentontheedge.server (plugin)‏‎ (19:03, 13 February 2017)
  153. Biouml.plugins.test (plugin)‏‎ (19:03, 13 February 2017)
  154. Biouml.plugins.sedml (plugin)‏‎ (19:03, 13 February 2017)
  155. Biouml.plugins.wiki (plugin)‏‎ (19:03, 13 February 2017)
  156. Ru.biosoft.access (plugin)‏‎ (19:03, 13 February 2017)
  157. Biouml.plugins.users (plugin)‏‎ (19:03, 13 February 2017)
  158. Ru.biosoft.access.search (plugin)‏‎ (19:03, 13 February 2017)
  159. Com.developmentontheedge.util (plugin)‏‎ (19:03, 13 February 2017)
  160. Biouml.plugins.stochastic (plugin)‏‎ (19:03, 13 February 2017)
  161. Biouml.plugins.sbml (plugin)‏‎ (19:03, 13 February 2017)
  162. Biouml.plugins.transfac (plugin)‏‎ (19:03, 13 February 2017)
  163. Ru.biosoft.analysis.optimization (plugin)‏‎ (19:03, 13 February 2017)
  164. Biouml.plugins.server (plugin)‏‎ (19:03, 13 February 2017)
  165. Biouml.plugins.simulation (plugin)‏‎ (19:03, 13 February 2017)
  166. Biouml.plugins.uniprot (plugin)‏‎ (19:03, 13 February 2017)
  167. Biouml.plugins.softberry (plugin)‏‎ (19:03, 13 February 2017)
  168. Biouml.plugins.simulation-test (plugin)‏‎ (19:03, 13 February 2017)
  169. Biouml.workbench (plugin)‏‎ (19:03, 13 February 2017)
  170. Ru.biosoft.fs (plugin)‏‎ (19:03, 13 February 2017)
  171. Ru.biosoft.galaxy (plugin)‏‎ (19:03, 13 February 2017)
  172. Ru.biosoft.graphics (plugin)‏‎ (19:03, 13 February 2017)
  173. Ru.biosoft.bsa.server (plugin)‏‎ (19:03, 13 February 2017)
  174. Ru.biosoft.graph (plugin)‏‎ (19:03, 13 February 2017)
  175. Biouml.plugins.seek (plugin)‏‎ (19:03, 13 February 2017)
  176. Ru.biosoft.proteome (plugin)‏‎ (19:03, 13 February 2017)
  177. Ru.biosoft.plugins.graph (plugin)‏‎ (19:03, 13 February 2017)
  178. Ru.biosoft.table (plugin)‏‎ (19:03, 13 February 2017)
  179. Ru.biosoft.services (plugin)‏‎ (19:03, 13 February 2017)
  180. Ru.biosoft.vm (plugin)‏‎ (19:03, 13 February 2017)
  181. Ru.biosoft.server.tomcat (plugin)‏‎ (19:03, 13 February 2017)
  182. Ru.biosoft.server (plugin)‏‎ (19:03, 13 February 2017)
  183. Ru.biosoft.plugins.javascript (plugin)‏‎ (19:03, 13 February 2017)
  184. Ru.biosoft.plugins.jri (plugin)‏‎ (19:03, 13 February 2017)
  185. Ru.biosoft.works (plugin)‏‎ (19:03, 13 February 2017)
  186. Ru.biosoft.server.servlets (plugin)‏‎ (19:03, 13 February 2017)
  187. Ru.biosoft.templates (plugin)‏‎ (19:03, 13 February 2017)
  188. Ru.biosoft.treetable (plugin)‏‎ (19:03, 13 February 2017)
  189. Ru.biosoft.math (plugin)‏‎ (19:03, 13 February 2017)
  190. Ru.biosoft.workbench (plugin)‏‎ (19:03, 13 February 2017)
  191. Servers‏‎ (21:54, 3 April 2017)
  192. Modeling cardiovascular system‏‎ (17:08, 3 October 2017)
  193. GTRD Workflow‏‎ (17:59, 29 November 2017)
  194. Creating Galaxy tool‏‎ (14:04, 17 January 2018)
  195. Моделирование сердечно-сосудистой системы‏‎ (17:18, 25 January 2018)
  196. Gene expression prediction‏‎ (22:09, 1 April 2018)
  197. Cell type specific TFBS prediction‏‎ (15:15, 5 April 2018)
  198. Ensembl installation‏‎ (13:58, 24 October 2018)
  199. Download‏‎ (16:20, 25 December 2018)
  200. Landing‏‎ (16:44, 26 December 2018)
  201. Modeling Antihypertensive drugs‏‎ (18:38, 21 January 2019)
  202. DAE Models examples‏‎ (13:23, 12 March 2019)
  203. Drugs - DrugBank‏‎ (16:30, 12 March 2019)
  204. Categories - BKL‏‎ (16:30, 12 March 2019)
  205. Substances - DrugBank (geneXplain)‏‎ (16:30, 12 March 2019)
  206. Substances - Pharmaceutical compounds‏‎ (16:30, 12 March 2019)
  207. Proteins - Reactome‏‎ (16:30, 12 March 2019)
  208. Stem-loop-miRNA - miRBase‏‎ (16:30, 12 March 2019)
  209. Mature-miRNA - miRBase‏‎ (16:30, 12 March 2019)
  210. Substances - ChEBI‏‎ (16:30, 12 March 2019)
  211. Methylation probes - Illumina‏‎ (16:31, 12 March 2019)
  212. Proteins - UniProt‏‎ (16:31, 12 March 2019)
  213. Probes - Affymetrix HTA-2-0‏‎ (16:31, 12 March 2019)
  214. Classification analysis‏‎ (16:32, 12 March 2019)
  215. Data matrix operations (analysis)‏‎ (16:32, 12 March 2019)
  216. LS-regression analysis‏‎ (16:32, 12 March 2019)
  217. Regression analysis‏‎ (16:32, 12 March 2019)
  218. LincRNA and mRNA features (analysis)‏‎ (16:32, 12 March 2019)
  219. Colon cancer signature2 (analysis)‏‎ (16:32, 12 March 2019)
  220. Calculate TFs regulatory score (analysis)‏‎ (16:33, 12 March 2019)
  221. Cytoscape network format‏‎ (16:33, 12 March 2019)
  222. Add reactants (analysis)‏‎ (16:33, 12 March 2019)
  223. Add expression values (analysis)‏‎ (16:33, 12 March 2019)
  224. Find longest connected chains (analysis)‏‎ (16:33, 12 March 2019)
  225. Find shortest path between two sets (analysis)‏‎ (16:33, 12 March 2019)
  226. Regulator search (analysis)‏‎ (16:33, 12 March 2019)
  227. Bsa (host object)‏‎ (16:34, 12 March 2019)
  228. Enrichment (host object)‏‎ (16:34, 12 March 2019)
  229. Model (host object)‏‎ (16:34, 12 March 2019)
  230. Normalize (host object)‏‎ (16:34, 12 March 2019)
  231. Analyze any DNA sequence, EMBL (workflow)‏‎ (16:34, 12 March 2019)
  232. Compute differentially expressed genes (Affymetrix probes) (workflow)‏‎ (16:34, 12 March 2019)
  233. ChIP-Seq - Identify and classify target genes (workflow)‏‎ (16:34, 12 March 2019)
  234. Analyze any DNA sequence, Fasta (workflow)‏‎ (16:34, 12 March 2019)
  235. Analyze any DNA sequence, GeneBank (workflow)‏‎ (16:34, 12 March 2019)
  236. Compute differentially expressed genes (Agilent Tox probes) (workflow)‏‎ (16:34, 12 March 2019)
  237. Compute differentially expressed genes (Agilent probes) (workflow)‏‎ (16:34, 12 March 2019)
  238. Compute differentially expressed genes (Illumina probes) (workflow)‏‎ (16:34, 12 March 2019)
  239. Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow)‏‎ (16:34, 12 March 2019)
  240. Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow)‏‎ (16:34, 12 March 2019)
  241. Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow)‏‎ (16:34, 12 March 2019)
  242. Convert identifiers for multiple gene sets (workflow)‏‎ (16:34, 12 March 2019)
  243. Compute differentially expressed genes using EBarrays (workflow)‏‎ (16:34, 12 March 2019)
  244. Compute differentially expressed genes using Limma (workflow)‏‎ (16:34, 12 March 2019)
  245. Find common effectors for multiple gene sets (GeneWays) (workflow)‏‎ (16:34, 12 March 2019)
  246. Explain my genes (workflow)‏‎ (16:34, 12 March 2019)
  247. Find genome variants and indels from full-genome NGS (workflow)‏‎ (16:34, 12 March 2019)
  248. Find common effectors in networks (GeneWays) (workflow)‏‎ (16:34, 12 March 2019)
  249. Find gene fusions from RNA-seq (workflow)‏‎ (16:34, 12 March 2019)
  250. Find genome variants and indels from RNA-seq (workflow)‏‎ (16:34, 12 March 2019)

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