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- Covid 19 (244 revisions)
- Optimization examples (190 revisions)
- GTRD (103 revisions)
- BioUML wiki (94 revisions)
- BioUML development history (70 revisions)
- Optimization problem (46 revisions)
- Tools Comparison 2022 (45 revisions)
- Flux balance analysis (44 revisions)
- Parameter identifiability example (42 revisions)
- BioUML (38 revisions)
- BioUML - systems biology (38 revisions)
- Antimony (36 revisions)
- BioUML development roadmap (31 revisions)
- BioUML user interface (29 revisions)
- Workflow (27 revisions)
- Sensitivity analysis example (27 revisions)
- Ru.biosoft.bsa (plugin) (24 revisions)
- Construct composite modules (analysis) (23 revisions)
- Construct composite modules on tracks (analysis) (23 revisions)
- Systems biology - model simulation (22 revisions)
- GTRD statistics (22 revisions)
- Flux Balance Constraint (analysis) (21 revisions)
- BioUML server installation (20 revisions)
- Biouml.plugins.gtrd (plugin) (20 revisions)
- Diagram document (20 revisions)
- Preprocess raw reads (analysis) (18 revisions)
- Ru.biosoft.analysis (plugin) (18 revisions)
- Enrichment analysis (18 revisions)
- ChIPHorde (analysis) (18 revisions)
- N-Glycan biosynthesis (18 revisions)
- Steady State (analysis) (18 revisions)
- GTRD comparison (18 revisions)
- Repository pane (17 revisions)
- ChIPMunk (analysis) (17 revisions)
- BioUML web edition (17 revisions)
- DiChIPHorde (analysis) (17 revisions)
- BioUML workbench (17 revisions)
- Effector search (analysis) (17 revisions)
- Metabolic control analysis example (17 revisions)
- Sensitivity Analysis (17 revisions)
- Functional classification (analysis) (17 revisions)
- BioStore (17 revisions)
- Composite module to proteins (analysis) (16 revisions)
- Convert table (analysis) (16 revisions)
- Ru.biosoft.access (plugin) (16 revisions)
- Nonlinear Model (analysis) (16 revisions)
- Biouml.workbench (plugin) (16 revisions)
- Linear Shifted Model (analysis) (16 revisions)
- MicroRNA aligner (analysis) (16 revisions)
- Tools Comparison (16 revisions)
- Biouml.plugins.ensembl (plugin) (16 revisions)
- Gene features (analysis) (16 revisions)
- Systems biology - model import (16 revisions)
- Read counter (analysis) (16 revisions)
- Regulator search (analysis) (16 revisions)
- Copy folder (analysis) (16 revisions)
- Install TRANSFAC(R) database (analysis) (16 revisions)
- Metabolic Control Analysis (16 revisions)
- Install TRANSPATH(R) database (analysis) (16 revisions)
- Track to gene set (analysis) (15 revisions)
- Stoichiometric Matrix (analysis) (15 revisions)
- Mutation effect (analysis) (15 revisions)
- Site search on gene set (analysis) (15 revisions)
- Analysis of Cis-Regulatory Modules (analysis) (15 revisions)
- Convert table to track (analysis) (15 revisions)
- Simulation analysis (15 revisions)
- Site search on track (analysis) (15 revisions)
- Apply state to diagram (analysis) (15 revisions)
- Filter one track by another (analysis) (15 revisions)
- Chromosome enrichment (analysis) (15 revisions)
- Filter table (analysis) (15 revisions)
- SDE model (analysis) (15 revisions)
- Filter track by condition (analysis) (15 revisions)
- Ru.biosoft.proteome (plugin) (15 revisions)
- Export element (analysis) (15 revisions)
- Creasemarks analysis (15 revisions)
- Gene overlap statistics (analysis) (15 revisions)
- Visualize results (analysis) (15 revisions)
- DiChIPMunk (analysis) (15 revisions)
- Venn diagrams (analysis) (15 revisions)
- Landing (15 revisions)
- Site distribution (analysis) (15 revisions)
- BioUML workbench installation (15 revisions)
- Track statistics (analysis) (15 revisions)
- Features (15 revisions)
- GeneXplain (15 revisions)
- Mass Conservation Analysis (14 revisions)
- Save hits (analysis) (14 revisions)
- Heterozygous site caller (analysis) (14 revisions)
- Save network (analysis) (14 revisions)
- Simulation (14 revisions)
- ChIP-seq peak profile (analysis) (14 revisions)
- SNP matching (analysis) (14 revisions)
- Server ICT (14 revisions)
- Convert table via homology (analysis) (14 revisions)
- Cluster analysis by K-means (analysis) (14 revisions)
- Reactions Analysis (14 revisions)
- Covid 19 parameters (14 revisions)
- Validate Experiments (analysis) (14 revisions)
- Affymetrix normalization (analysis) (14 revisions)
- Merge track statistics (analysis) (14 revisions)
- Biouml.plugins.chipmunk (plugin) (14 revisions)
- Gene set to track (analysis) (14 revisions)
- Cluster by shortest path (analysis) (14 revisions)
- Annotate track with genes (analysis) (14 revisions)
- Create DAS track (analysis) (14 revisions)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (14 revisions)
- Agilent normalization (analysis) (14 revisions)
- Compare Experiments (analysis) (14 revisions)
- BioNetGen (14 revisions)
- Biouml.plugins.creasemarks (plugin) (14 revisions)
- Biouml.plugins.transpath (plugin) (14 revisions)
- Site counts in repeats (analysis) (14 revisions)
- Create IPS model (analysis) (14 revisions)
- Track coverage (analysis) (14 revisions)
- PASS analysis (14 revisions)
- Change profile cutoffs (analysis) (14 revisions)
- Process track with sites (analysis) (14 revisions)
- Building Flux Balance DataTable (analysis) (14 revisions)
- Compare site models (analysis) (14 revisions)
- Biouml.plugins.modelreduction (plugin) (13 revisions)
- Ru.biosoft.table (plugin) (13 revisions)
- Add expression values (analysis) (13 revisions)
- Create folder (analysis) (13 revisions)
- Genome Browser json (13 revisions)
- Biouml.plugins.enrichment (plugin) (13 revisions)
- Ru.biosoft.workbench (plugin) (13 revisions)
- Systems biology - manual model construction (13 revisions)
- Illumina normalization (analysis) (13 revisions)
- Create weight matrix model (analysis) (13 revisions)
- Biouml.plugins.chemoinformatics (plugin) (13 revisions)
- Bowtie (analysis) (13 revisions)
- Site search result optimization (analysis) (13 revisions)
- Construct IPS CisModule (analysis) (13 revisions)
- Select table columns (analysis) (13 revisions)
- Genome coverage (analysis) (13 revisions)
- Annotate table (analysis) (13 revisions)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (13 revisions)
- Site search summary (analysis) (13 revisions)
- CRC Analysis (13 revisions)
- Biouml.plugins.cma (plugin) (13 revisions)
- Biouml.plugins.transfac (plugin) (13 revisions)
- Motif quality analysis (13 revisions)
- Biouml.plugins.bindingregions (plugin) (13 revisions)
- Correlation Analysis (13 revisions)
- Create profile from gene table (analysis) (13 revisions)
- Join several tables (analysis) (13 revisions)
- Create Match model (analysis) (13 revisions)
- Convert site models to proteins (analysis) (13 revisions)
- Adaptive simulated annealing (analysis) (13 revisions)
- IPS motif discovery (analysis) (13 revisions)
- Biouml.plugins.bkl (plugin) (13 revisions)
- Join tracks (analysis) (13 revisions)
- Biouml.plugins.reactome (plugin) (12 revisions)
- Biouml.plugins.bowtie (plugin) (12 revisions)
- Biouml.plugins.keynodes (plugin) (12 revisions)
- Biouml.plugins.simulation (plugin) (12 revisions)
- Biouml.plugins.endonet (plugin) (12 revisions)
- Biouml.plugins.cellml (plugin) (12 revisions)
- Biouml.plugins.pass (plugin) (12 revisions)
- Biouml.plugins.go (plugin) (12 revisions)
- Manual parameter fitting (12 revisions)
- Biouml.plugins.sbml (plugin) (12 revisions)
- Upload from FTP (analysis) (12 revisions)
- GTRD Workflow (12 revisions)
- Fastq mcf (12 revisions)
- Biouml.plugins.bionetgen (plugin) (12 revisions)
- Ru.biosoft.server (plugin) (12 revisions)
- GeneNet (12 revisions)
- Join table (analysis) (12 revisions)
- Biouml.plugins.das (plugin) (12 revisions)
- ChIP-seq Analysis (11 revisions)
- Information box (11 revisions)
- Galaxy installation (11 revisions)
- Fold-Change calculation (analysis) (11 revisions)
- Creating Galaxy tool (11 revisions)
- Hadoop (11 revisions)
- Biouml.plugins.fbc (plugin) (11 revisions)
- Map to Transpath (analysis) (11 revisions)
- Tutorials (11 revisions)
- Biouml.plugins.genemodels (plugin) (11 revisions)
- Extend network (analysis) (10 revisions)
- Biouml.plugins.kegg (plugin) (10 revisions)
- Biouml.plugins.ginsim (plugin) (10 revisions)
- Cellular genetic algorithm (analysis) (10 revisions)
- Ru.biosoft.analysis.optimization (plugin) (10 revisions)
- Quadratic Hill-climbing (analysis) (10 revisions)
- Evolution strategy (SRES) (analysis) (10 revisions)
- Biouml.plugins.softberry (plugin) (10 revisions)
- GLBSOLVE (analysis) (10 revisions)
- Analyze promoters (GTRD) (workflow) (10 revisions)
- BioUML team (10 revisions)
- Biouml.plugins.optimization (plugin) (10 revisions)
- Polynomial Regression analysis (10 revisions)
- Up and Down Identification (analysis) (10 revisions)
- Ru.biosoft.plugins.javascript (plugin) (10 revisions)
- Presentations (10 revisions)
- Particle swarm optimization (analysis) (10 revisions)
- Biouml.plugins.expression (plugin) (10 revisions)
- Hypergeometric analysis (10 revisions)
- Meta analysis (10 revisions)
- Biouml.plugins.microarray (plugin) (10 revisions)
- Join diagrams (analysis) (10 revisions)
- Ensembl installation (10 revisions)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (10 revisions)
- Ru.biosoft.galaxy (plugin) (10 revisions)
- Biouml.plugins.sedml (plugin) (10 revisions)
- Biouml.plugins.illumina (plugin) (10 revisions)
- Gene set enrichment analysis (Illumina probes) (workflow) (10 revisions)
- Databases (9 revisions)
- MGL (9 revisions)
- Analysis method development (9 revisions)
- Ru.biosoft.templates (plugin) (9 revisions)
- Biomodels (9 revisions)
- Ru.biosoft.math (plugin) (9 revisions)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (9 revisions)
- R installation (9 revisions)
- SBGN extension (9 revisions)
- Host object (extension point) (9 revisions)
- Create matrix by mixture of normal components (analysis) (9 revisions)
- Biouml.plugins.sabiork (plugin) (9 revisions)
- Ru.biosoft.plugins.jri (plugin) (9 revisions)
- Biouml.plugins.expasy (plugin) (9 revisions)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (9 revisions)
- Mapping to ontologies for multiple gene sets (workflow) (9 revisions)
- Biouml.plugins.sbw (plugin) (9 revisions)
- BioUML exceptions (9 revisions)
- Diagram (element type) (9 revisions)
- Steady State Examples (9 revisions)
- Ru.biosoft.graph (plugin) (9 revisions)
- Method (extension point) (9 revisions)
- CWL (9 revisions)
- Biouml.plugins.wiki (plugin) (8 revisions)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (8 revisions)
- Ru.biosoft.access.search (plugin) (8 revisions)
- Biouml.plugins.simulation-test (plugin) (8 revisions)
- Biouml.workbench.graph (plugin) (8 revisions)
- Hierarchical layout (8 revisions)
- Biouml.plugins.research (plugin) (8 revisions)
- GC island finder (analysis) (8 revisions)
- Biouml.plugins.obo (plugin) (8 revisions)
- Ru.biosoft.treetable (plugin) (8 revisions)
- Com.developmentontheedge.server (plugin) (8 revisions)
- Transplorer (8 revisions)
- Biouml.plugins.lucene (plugin) (8 revisions)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (8 revisions)
- Rbiouml (8 revisions)
- Defines.js (8 revisions)
- Biouml.plugins.gne (plugin) (8 revisions)
- Com.developmentontheedge.util (plugin) (8 revisions)
