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  1. Binding regions summary (analysis)
  2. BioBlend
  3. BioCloudCentral
  4. BioGears
  5. BioHub
  6. BioNetGen
  7. BioNetGen language format
  8. BioPAX file
  9. BioStore
  10. BioUML
  11. BioUML - systems biology
  12. BioUML Development Kit
  13. BioUML Simulation result (file format)
  14. BioUML development history
  15. BioUML development roadmap
  16. BioUML exceptions
  17. BioUML format
  18. BioUML installation
  19. BioUML overview
  20. BioUML server
  21. BioUML server installation
  22. BioUML team
  23. BioUML user interface
  24. BioUML web client
  25. BioUML web edition
  26. BioUML wiki
  27. BioUML workbench
  28. BioUML workbench installation
  29. Biohub (extension point)
  30. Biohub (host object)
  31. Biomodels
  32. Biopath
  33. Biouml.plugins.affymetrix (plugin)
  34. Biouml.plugins.agentmodeling (plugin)
  35. Biouml.plugins.agilent (plugin)
  36. Biouml.plugins.antimony (plugin)
  37. Biouml.plugins.bindingregions (plugin)
  38. Biouml.plugins.bionetgen (plugin)
  39. Biouml.plugins.biopax (plugin)
  40. Biouml.plugins.bkl (plugin)
  41. Biouml.plugins.bowtie (plugin)
  42. Biouml.plugins.ccsignature (plugin)
  43. Biouml.plugins.cellml (plugin)
  44. Biouml.plugins.chebi (plugin)
  45. Biouml.plugins.chemoinformatics (plugin)
  46. Biouml.plugins.chipmunk (plugin)
  47. Biouml.plugins.cma (plugin)
  48. Biouml.plugins.creasemarks (plugin)
  49. Biouml.plugins.cytoscape (plugin)
  50. Biouml.plugins.das (plugin)
  51. Biouml.plugins.download (plugin)
  52. Biouml.plugins.dropbox (plugin)
  53. Biouml.plugins.endonet (plugin)
  54. Biouml.plugins.enrichment (plugin)
  55. Biouml.plugins.ensembl (plugin)
  56. Biouml.plugins.expasy (plugin)
  57. Biouml.plugins.expression (plugin)
  58. Biouml.plugins.fbc (plugin)
  59. Biouml.plugins.genemodels (plugin)
  60. Biouml.plugins.genenet (plugin)
  61. Biouml.plugins.geneways (plugin)
  62. Biouml.plugins.genomeenhancer (plugin)
  63. Biouml.plugins.ginsim (plugin)
  64. Biouml.plugins.glycan (plugin)
  65. Biouml.plugins.gne (plugin)
  66. Biouml.plugins.go (plugin)
  67. Biouml.plugins.googledrive (plugin)
  68. Biouml.plugins.graphml (plugin)
  69. Biouml.plugins.gtrd (plugin)
  70. Biouml.plugins.gxl (plugin)
  71. Biouml.plugins.hemodynamics (plugin)
  72. Biouml.plugins.illumina (plugin)
  73. Biouml.plugins.kegg (plugin)
  74. Biouml.plugins.keynodes (plugin)
  75. Biouml.plugins.lucene (plugin)
  76. Biouml.plugins.machinelearning (plugin)
  77. Biouml.plugins.matlab (plugin)
  78. Biouml.plugins.metabolics (plugin)
  79. Biouml.plugins.microarray (plugin)
  80. Biouml.plugins.mirbase (plugin)
  81. Biouml.plugins.miriam (plugin)
  82. Biouml.plugins.mirprom (plugin)
  83. Biouml.plugins.modelreduction (plugin)
  84. Biouml.plugins.node (plugin)
  85. Biouml.plugins.obo (plugin)
  86. Biouml.plugins.optimization (plugin)
  87. Biouml.plugins.pass (plugin)
  88. Biouml.plugins.pathfinder (plugin)
  89. Biouml.plugins.perfectosape (plugin)
  90. Biouml.plugins.pharm (plugin)
  91. Biouml.plugins.proteinmodel (plugin)
  92. Biouml.plugins.psimi (plugin)
  93. Biouml.plugins.reactome.biohub (plugin)
  94. Biouml.plugins.reactome (plugin)
  95. Biouml.plugins.research (plugin)
  96. Biouml.plugins.riboseqArticleResult (plugin)
  97. Biouml.plugins.riboseq (plugin)
  98. Biouml.plugins.sabiork (plugin)
  99. Biouml.plugins.sbgn (plugin)
  100. Biouml.plugins.sbml (plugin)
  101. Biouml.plugins.sbw (plugin)
  102. Biouml.plugins.sedml (plugin)
  103. Biouml.plugins.seek (plugin)
  104. Biouml.plugins.server (plugin)
  105. Biouml.plugins.simulation-test (plugin)
  106. Biouml.plugins.simulation (plugin)
  107. Biouml.plugins.softberry (plugin)
  108. Biouml.plugins.stochastic (plugin)
  109. Biouml.plugins.svg (plugin)
  110. Biouml.plugins.test (plugin)
  111. Biouml.plugins.transfac (plugin)
  112. Biouml.plugins.transpath (plugin)
  113. Biouml.plugins.uniprot (plugin)
  114. Biouml.plugins.users (plugin)
  115. Biouml.plugins.wiki (plugin)
  116. Biouml.workbench.graph (plugin)
  117. Biouml.workbench (plugin)
  118. Bioumlsim
  119. Blast alignment coverage (analysis)
  120. Bowtie (analysis)
  121. Breakdancer output (file format)
  122. Bsa (host object)
  123. BuildASiteOffsetTable (analysis)
  124. BuildProfileModel (analysis)
  125. Building Flux Balance DataTable (analysis)
  126. C-tau
  127. CMA Result Statistic (analysis)
  128. CNVnator genotype output (file format)
  129. COVID-19 parameters for Intestine
  130. COVID-19 parameters for Lung
  131. COVID-19 parameters for Nasopharynx
  132. CRC Analysis
  133. CRISPR Cas9 and specific oligonucleotides (analysis)
  134. CR cluster selector (analysis)
  135. CWL
  136. Calculate CMA regulation (analysis)
  137. Calculate TFs regulatory score (analysis)
  138. Calculate keynodes ranks (analysis)
  139. Calculate weighted mutation score (analysis)
  140. Categories (reference type)
  141. Categories - BKL
  142. Categories - ExPASy
  143. Categories - GTRD
  144. Categories - Gene ontology
  145. Cdk (host object)
  146. CellML (file format)
  147. Cell - EndoNet
  148. Cell type specific TFBS prediction
  149. Cellular genetic algorithm (analysis)
  150. ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow)
  151. ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow)
  152. ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow)
  153. ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow)
  154. ChIP-Seq - Identify and classify target genes (workflow)
  155. ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow)
  156. ChIP-Seq characteristics distribution (analysis)
  157. ChIP-Seq peaks clusterization (analysis)
  158. ChIP-seq Analysis
  159. ChIP-seq Quality control analysis
  160. ChIP-seq peak profile (analysis)
  161. ChIP-seq peaks - GTRD
  162. ChIPHorde (analysis)
  163. ChIPMunk (analysis)
  164. ChIPMunk (perspective)
  165. ChIP experiment - GTRD
  166. Change diagram (analysis)
  167. Change profile cutoffs (analysis)
  168. Check Workflow consistency (analysis)
  169. Check quotas (analysis)
  170. Chipmunk (host object)
  171. ChromatinInfo table creation (analysis)
  172. Chromosome enrichment (analysis)
  173. Cis-module identification (analysis)
  174. Cis-module sets near given genes (analysis)
  175. Cistrom construction (analysis)
  176. Classification analysis
  177. Classification analysis advanced (analysis)
  178. Classification hub
  179. Clean up SQL database (analysis)
  180. CloudBioLinux
  181. CloudMan
  182. Cluster analysis
  183. Cluster analysis by K-means (analysis)
  184. Cluster by path (analysis)
  185. Cluster by shortest path (analysis)
  186. Cluster track (analysis)
  187. Collaborative diagram editing
  188. Colon cancer signature2 (analysis)
  189. Colon cancer signature (analysis)
  190. Color space to nucleotide (analysis)
  191. Com.developmentontheedge.beans (plugin)
  192. Com.developmentontheedge.server (plugin)
  193. Com.developmentontheedge.util (plugin)
  194. Combined track
  195. Common and IPS scores correlation (analysis)
  196. Common class (extension point)
  197. Compare Experiments (analysis)
  198. Compare TFBS mutations (analysis)
  199. Compare analysis results (analysis)
  200. Compare site models (analysis)
  201. Composite module to proteins (analysis)
  202. ComputeProfileSums (analysis)
  203. ComputeTranscriptProfile (analysis)
  204. Compute coverage by window (analysis)
  205. Compute coverage profile (analysis)
  206. Compute differentially expressed genes (Affymetrix probes) (workflow)
  207. Compute differentially expressed genes (Agilent Tox probes) (workflow)
  208. Compute differentially expressed genes (Agilent probes) (workflow)
  209. Compute differentially expressed genes (Illumina probes) (workflow)
  210. Compute differentially expressed genes using EBarrays (workflow)
  211. Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow)
  212. Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow)
  213. Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow)
  214. Compute differentially expressed genes using Limma (workflow)
  215. Compute profile thresholds (analysis)
  216. Construct IPS CisModule (analysis)
  217. Construct composite modules (analysis)
  218. Construct composite modules on track (correlation) (analysis)
  219. Construct composite modules on tracks (analysis)
  220. Construct composite modules on tracks (without site search) (analysis)
  221. Construct composite modules on tracks with keynodes (analysis)
  222. Construct composite modules with keynodes (analysis)
  223. Context item (extension point)
  224. Continue CMA (analysis)
  225. Contributors
  226. Convert diagram to Transpath (analysis)
  227. Convert diagram to pairs (analysis)
  228. Convert files to tracks (analysis)
  229. Convert genomic BAM to transcriptomic (analysis)
  230. Convert identifiers for multiple gene sets (workflow)
  231. Convert site models to proteins (analysis)
  232. Convert site search summary (analysis)
  233. Convert table (analysis)
  234. Convert table to VCF track (analysis)
  235. Convert table to track (analysis)
  236. Convert table via homology (analysis)
  237. Convert tracks to VCF (analysis)
  238. Copy data element (analysis)
  239. Copy folder (analysis)
  240. Correlation Analysis
  241. Correlations of best sites (analysis)
  242. Count olig frequencies (analysis)
  243. Count reads in transcripts (analysis)
  244. CoverageCheker (analysis)
  245. Coverage Profiles Cutoff (analysis)
  246. Covid-19 Differential Delay Model
  247. Covid 19
  248. Covid 19 parameters
  249. Creasemarks analysis
  250. Create DAS track (analysis)

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