Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
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*[[File:Default-analysis-icon.png]] [[Summary on AUCs (analysis)|Summary on AUCs]] | *[[File:Default-analysis-icon.png]] [[Summary on AUCs (analysis)|Summary on AUCs]] | ||
*[[File:Default-analysis-icon.png]] [[Two multivariate sample analysis]] | *[[File:Default-analysis-icon.png]] [[Two multivariate sample analysis]] | ||
| − | *[[File:Default-analysis-icon.png]] [[ | + | *[[File:Default-analysis-icon.png]] [[LincRNA and mRNA features (analysis)|lincRNA and mRNA features]] |
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:ISB plugins]] | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 16:40, 11 December 2014
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.8
Extension points
Extension points defined in this plugin:
Analysis methods
Analysis methods defined in this plugin:
Analysis of Binding Regions
- Analysis of Cis-Regulatory Modules
- Binding regions summary
- CRISPR Cas9 and specific oligonucleotides
- ChIP-Seq characteristics distribution
- ChIP-Seq peaks clusterization
- Cis-module identification
- Cis-module sets near given genes
- Common and IPS scores correlation
- Convert files to tracks
- Correlations of best sites
- Count olig frequencies
- Create matrix by mixture of normal components
- Create matrix by mixture of normal components (ChIP-seq)
- Discrimination between high and low translation efficiencies
- Distinct TF classes
- Filtration of predicted sites by filters
- Gathering genome statistics
- IPS ROC-curves
- IPS prediction
- IPS-scores in SNPs
- Identical best site ROC-curves
- Identification of cis-regulatory modules with given pattern of TF-classes
- Identification of composite elements by filters
- Locations of best sites
- Matrix comparison
- Merge binding regions for cell-lines
- Mixture of normal components
- Non-merged ChIP-Seq tracks summary
- Oligonucleotides in mRNA fragments
- Peak finders comparison
- Prediction of TF-binding sites of given TF
- ROC curves for best sites union
- ROC-curves in clusterized peaks
- ROC-curves in grouped peaks
- ROC-curves in overlapped ChIP-Seq peaks
- Ribo-Seq and mRNA features
- SNP regions in genome
- SNPs in binding regions
- Start codon clusterization
- Summary on AUCs
- Two multivariate sample analysis
- lincRNA and mRNA features
