User contributions
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- 12:19, 13 September 2013 (diff | hist) . . (+52) . . Method (extension point) (+Analysis method development) (top)
- 17:37, 12 September 2013 (diff | hist) . . (0) . . m File:Visual adding species to model step 2.png (Lan@dote.ru moved page File:Add species 2.png to File:Visual adding species to model step 2.png without leaving a redirect) (top)
- 17:37, 12 September 2013 (diff | hist) . . (0) . . m File:Visual adding species to model step 1.png (Lan@dote.ru moved page File:Add species 1.png to File:Visual adding species to model step 1.png) (top)
- 17:36, 12 September 2013 (diff | hist) . . (+48) . . Visual modeling (top)
- 17:36, 12 September 2013 (diff | hist) . . (+10) . . Visual modeling
- 17:35, 12 September 2013 (diff | hist) . . (0) . . m File:Visual modeling interface.png (Lan@dote.ru moved page File:Interface model.png to File:Visual modeling interface.png without leaving a redirect) (top)
- 17:02, 12 September 2013 (diff | hist) . . (+99) . . Category:Plugins (top)
- 17:01, 12 September 2013 (diff | hist) . . (+91) . . Category:Analyses (top)
- 17:00, 12 September 2013 (diff | hist) . . (+42) . . R installation
- 17:00, 12 September 2013 (diff | hist) . . (+14) . . Using R in BioUML (+rbiouml) (top)
- 16:59, 12 September 2013 (diff | hist) . . (-2) . . m Rbiouml
- 16:58, 12 September 2013 (diff | hist) . . (+518) . . N Rbiouml (Created page with "'''rbiouml''' is an {{{R}}} package which allows accessing BioUML server from R script. It's available on CRAN repository: http://cran.r-project.org/web/packages/rbiouml/ ...")
- 16:51, 12 September 2013 (diff | hist) . . (+16) . . Antimony
- 16:51, 12 September 2013 (diff | hist) . . (0) . . m File:Antimony adding species.png (Lan@dote.ru moved page File:Species.png to File:Antimony adding species.png without leaving a redirect) (top)
- 16:30, 12 September 2013 (diff | hist) . . (0) . . m Visual modeling (Typo)
- 16:30, 12 September 2013 (diff | hist) . . (+52) . . Visual modeling
- 16:29, 12 September 2013 (diff | hist) . . (0) . . m File:BioUML workbench Variables viewpart.png (Lan@dote.ru moved page File:Variables.png to File:BioUML workbench Variables viewpart.png without leaving a redirect) (top)
- 16:29, 12 September 2013 (diff | hist) . . (0) . . m File:BioUML workbench Parameters viewpart.png (Lan@dote.ru moved page File:Parameters.png to File:BioUML workbench Parameters viewpart.png) (top)
- 16:23, 12 September 2013 (diff | hist) . . (+41) . . m Analysis method development (+Creating custom parameter editor (stub))
- 16:22, 12 September 2013 (diff | hist) . . (+2,603) . . Analysis method development (→Implementing analysis)
- 16:00, 12 September 2013 (diff | hist) . . (+182) . . Analysis method development (+referenceType selector - →Registering complex parameters)
- 18:10, 11 September 2013 (diff | hist) . . (+585) . . Analysis method development
- 18:02, 11 September 2013 (diff | hist) . . (+3,638) . . Analysis method development (→Writing bean info class for parameters)
- 12:24, 11 September 2013 (diff | hist) . . (-10) . . BioUML exceptions (top)
- 12:23, 11 September 2013 (diff | hist) . . (+18) . . m Analysis method development (link to exceptions page fixed - →Logging)
- 12:23, 11 September 2013 (diff | hist) . . (+6,051) . . N Analysis method development (Preliminary description of analysis)
- 12:20, 11 September 2013 (diff | hist) . . (+239) . . N Template:Field (Created page with "<noinclude>Usage: <nowiki>{{Field|<fully_qualified_Java_field_name>}}</nowiki> </noinclude><includeonly><code title="{{{1}}}" style="border-bottom: 1px dotted black">{{#explo...") (top)
- 11:35, 10 September 2013 (diff | hist) . . (+4,536) . . N Plugin development (Created page with "This page describes steps necessary to create your own BioUML or BDK plugin. Suppose you want to create plugin named <code>biouml.plugins.myplugin</code>. All paths ar...") (top)
- 11:05, 10 September 2013 (diff | hist) . . (+36) . . N BDK (Redirected page to BioUML Development Kit) (top)
- 10:17, 28 August 2013 (diff | hist) . . (+4) . . Common class (extension point) ("name" -> "class") (top)
- 13:35, 26 August 2013 (diff | hist) . . (+2,440) . . N Document factory (extension point) (Created page with "{{Extension point|documentFactory|ru.biosoft.workbench}} ;Applicable for :BioUML workbench === Description === This extension points configures document type in [[BioUML w...") (top)
- 11:04, 19 August 2013 (diff | hist) . . (+167) . . Product (top)
- 11:02, 19 August 2013 (diff | hist) . . (+89) . . BioUML server (top)
- 11:00, 19 August 2013 (diff | hist) . . (+74) . . N Category:Administration (Created page with "This category contasins pages related to BioUML server administration.") (top)
- 11:00, 19 August 2013 (diff | hist) . . (+29) . . m Server administrator (+Category:Administration) (top)
- 10:59, 19 August 2013 (diff | hist) . . (+1,583) . . N Product (Created page with "'''Product''' is a subset of functionality provided by BioUML-based software (for example, BioUML server). Products are defined in BioStore in server configuration...")
- 11:07, 14 August 2013 (diff | hist) . . (+151) . . m Creating Galaxy tool (Formatting - →Configurable file format)
- 15:44, 7 August 2013 (diff | hist) . . (+1) . . m BioUML exceptions (Typo fixed - →Exception descriptors)
- 15:44, 7 August 2013 (diff | hist) . . (+98) . . BioUML exceptions (Logging levels updated - →Exception descriptors)
- 15:29, 6 August 2013 (diff | hist) . . (-11) . . GTRD (GTRD URL changed to gtrd.biouml.org)
- 10:42, 2 August 2013 (diff | hist) . . (+4) . . m Hash parameters (perspective link - →Known parameters) (top)
- 10:42, 2 August 2013 (diff | hist) . . (+46) . . Hash parameters (+perspective - →Known parameters)
- 10:18, 2 August 2013 (diff | hist) . . (+169) . . Hash parameters (+docOnly - →Known parameters)
- 12:35, 1 August 2013 (diff | hist) . . (+1,751) . . N Hash parameters (Created page with "'''Hash parameters''' are URL parameters supported by BioUML web edition which can be placed after hash (#) symbol. For example, in URL http://ie.biouml.org/bioumlweb#anon...")
- 11:32, 30 July 2013 (diff | hist) . . (+21) . . m Defines.js ({{BioUML current version}} used - →Example)
- 11:31, 30 July 2013 (diff | hist) . . (+24) . . Galaxy installation (glaunch location) (top)
- 15:22, 29 July 2013 (diff | hist) . . (-8) . . m BioUML server installation (Quotes - →bioumlsupport2 database)
- 18:07, 23 July 2013 (diff | hist) . . (0) . . m BioUML exceptions (BioSoft*Exception -> Biosoft*Exception)
- 18:00, 23 July 2013 (diff | hist) . . (+5) . . BioUML exceptions (BioUML*Exception -> BioSoft*Exception)
- 11:49, 23 July 2013 (diff | hist) . . (+611) . . BioUML exceptions (+Descriptors)
- 17:58, 22 July 2013 (diff | hist) . . (+6) . . BioUML exceptions (→Usage guidelines)
- 17:22, 22 July 2013 (diff | hist) . . (+296) . . BioUML exceptions (+getDataElement)
- 17:14, 22 July 2013 (diff | hist) . . (+7,113) . . N BioUML exceptions (Created page with "{{Draft}} This article describes new BioUML exception handling concept introduced in version 0.9.6. == Overview == '''BioUML exceptions''' (short: '''BUEX''') are descend...")
- 16:41, 22 July 2013 (diff | hist) . . (0) . . N File:Application log error log workbench.png (top)
- 16:45, 15 July 2013 (diff | hist) . . (+135) . . GO installation (+MySQL packet size info) (top)
- 11:46, 10 July 2013 (diff | hist) . . (+41) . . BioUML team (More user links)
- 11:41, 10 July 2013 (diff | hist) . . (+46) . . Lucene indexes creation (See also)
- 11:40, 10 July 2013 (diff | hist) . . (0) . . m Lucene indexes creation (Cosmetic)
- 11:36, 10 July 2013 (diff | hist) . . (+2,313) . . N Lucene indexes creation (Created page with "'''Lucene indexes''' are necessary for Lucene search to work. Indexes are created for each database separately in <code>databases</code> collection and stored inside <code...")
- 11:22, 10 July 2013 (diff | hist) . . (0) . . N File:Lucene indexes creation workbench process.png (top)
- 11:17, 10 July 2013 (diff | hist) . . (0) . . N File:Lucene indexes creation workbench.png (top)
- 16:46, 3 July 2013 (diff | hist) . . (+65) . . Tree-table document (+see also) (top)
- 16:45, 3 July 2013 (diff | hist) . . (+687) . . N Tree-table document (Created page with "'''Tree-table document''' is the default representation for {{Type link|tree-table}} elements. Currently this document type allows only viewing of {{Type link|tree-table}}s (n...")
- 16:41, 3 July 2013 (diff | hist) . . (0) . . N File:Type-tree-table-example-workbench.png (top)
- 16:34, 3 July 2013 (diff | hist) . . (+24) . . m Application log (viewpart) (+Category:Viewparts)
- 16:34, 3 July 2013 (diff | hist) . . (+852) . . N Application log (viewpart) (Created page with "Application log viewpart displaying the information messages of [[File:Data-Annotate-table-icon.png [[Annota...")
- 16:33, 3 July 2013 (diff | hist) . . (0) . . m Workflow (Lan@dote.ru moved page Workflows to Workflow: Plural to singular)
- 16:33, 3 July 2013 (diff | hist) . . (+22) . . N Workflows (Lan@dote.ru moved page Workflows to Workflow: Plural to singular) (top)
- 16:27, 3 July 2013 (diff | hist) . . (0) . . N File:BioUML workbench application log viewpart.png (top)
- 16:13, 3 July 2013 (diff | hist) . . (+1,469) . . Classification hub (Implementation via SqlCachedFunctionalHubSupport) (top)
- 15:57, 3 July 2013 (diff | hist) . . (-2) . . m Matching BioHub (Sections level changed) (top)
- 15:57, 3 July 2013 (diff | hist) . . (-4) . . m Matching BioHub (Sections level changed)
- 15:56, 3 July 2013 (diff | hist) . . (+731) . . Matching BioHub (Notes on SQL connection, subsections - →Implementation of SQL-based matching hub)
- 12:37, 3 July 2013 (diff | hist) . . (+76) . . Classification hub (+{{Stub}})
- 12:33, 3 July 2013 (diff | hist) . . (0) . . m BioUML wiki (→Community)
- 12:32, 3 July 2013 (diff | hist) . . (+17) . . BioUML wiki (+Databases)
- 12:31, 3 July 2013 (diff | hist) . . (+4) . . Defines.js
- 12:23, 3 July 2013 (diff | hist) . . (+3,949) . . Matching BioHub (Technical details and implementation via SqlBasedHub added)
- 12:04, 3 July 2013 (diff | hist) . . (+31) . . m Script viewpart (Link to Using JavaScript in BioUML)
- 11:27, 3 July 2013 (diff | hist) . . (+44) . . GeneXplain
- 11:00, 3 July 2013 (diff | hist) . . (+97) . . GeneXplain (Address added)
- 22:13, 2 July 2013 (diff | hist) . . (+19) . . m GTRD (Cosmetic - →Search capabilities)
- 18:19, 2 July 2013 (diff | hist) . . (+71) . . N Yury Kondrakhin (Created page with "Yury Kondrakhin, Ph.D. Researcher at Institute of Systems Biology.") (top)
- 18:18, 2 July 2013 (diff | hist) . . (+65) . . N Ruslan Sharipov (Created page with "Ruslan Sharipov. Researcher at Institute of Systems Biology.") (top)
- 14:22, 2 July 2013 (diff | hist) . . (+26) . . Document pane (+Tree-table document) (top)
- 14:20, 2 July 2013 (diff | hist) . . (+12) . . m GTRD
- 14:19, 2 July 2013 (diff | hist) . . (+27) . . m GTRD (de in GTRD link)
- 13:42, 2 July 2013 (diff | hist) . . (+7) . . m MGL (links - →MGL structure) (top)
- 13:40, 2 July 2013 (diff | hist) . . (+11) . . Template:Stub (top)
- 13:39, 2 July 2013 (diff | hist) . . (+33) . . m Cross cost grid layout (+stub message) (top)
- 13:39, 2 July 2013 (diff | hist) . . (+33) . . m Hierarchical layout (+stub message) (top)
- 13:38, 2 July 2013 (diff | hist) . . (+33) . . m Orthogonal layout (+stub message) (top)
- 13:38, 2 July 2013 (diff | hist) . . (+33) . . m Grid layout (+stub message) (top)
- 13:36, 2 July 2013 (diff | hist) . . (+21) . . GTRD ({{stub}} - →Web interface to database)
- 13:35, 2 July 2013 (diff | hist) . . (+72) . . GTRD (+tree-tables link)
- 13:32, 2 July 2013 (diff | hist) . . (+102) . . GTRD (Links to external databases)
- 13:30, 2 July 2013 (diff | hist) . . (+31) . . Tree-table (element type) (top)
- 13:28, 2 July 2013 (diff | hist) . . (+2,667) . . N Tree-table (element type) (Created page with "{{Element type|tree-table|ru.biosoft.treetable.TreeTableElement}} === Description === This element represents a mixture of table and the tree: each tree branch or leaf can be ...")
- 13:28, 2 July 2013 (diff | hist) . . (0) . . N File:Type-tree-table-example-web.png (top)
- 12:43, 1 July 2013 (diff | hist) . . (+1,899) . . N Classification hub (Created page with "'''Classification hub''' is a kind of BioHub which used to classify the genes into several groups. This BioHub type is defined in [[Biouml.plugins.enrichment (plugin)|biou...")
- 12:27, 1 July 2013 (diff | hist) . . (+217) . . Gene Ontology (+classification hubs) (top)
- 12:23, 1 July 2013 (diff | hist) . . (+21) . . m Gene Ontology (+GO installation)
- 12:10, 1 July 2013 (diff | hist) . . (+1,805) . . N Import (extension point) (Created page with "{{Extension point|import|ru.biosoft.access|since=0.9.0|registry=ru.biosoft.access.DataElementImporterRegistry}} === Description === Using this extension point you can provide ...") (top)
- 12:02, 1 July 2013 (diff | hist) . . (+230) . . N Template:Constant (Created page with "<noinclude>Usage: <nowiki>{{Constant|<fully_qualified_Java_class_name.CONSTANT_NAME>}}</nowiki> </noinclude><includeonly><code title="{{{1}}}" style="border-bottom: 1px dotte...") (top)
- 11:57, 1 July 2013 (diff | hist) . . (0) . . N File:File-import-dialog-web.png (top)
- 11:57, 1 July 2013 (diff | hist) . . (0) . . N File:File-import-dialog-workbench.png (top)
- 11:42, 1 July 2013 (diff | hist) . . (+33) . . 1-dimensional arterial tree model (DOI) (top)
- 11:40, 1 July 2013 (diff | hist) . . (+34) . . Modular model of the human CVS v.2 (DOI) (top)
- 11:39, 1 July 2013 (diff | hist) . . (+39) . . Overall circulation model (DOI) (top)
- 11:37, 1 July 2013 (diff | hist) . . (+34) . . Long-term model of the CVS/Renal system (DOI) (top)
- 11:37, 1 July 2013 (diff | hist) . . (+34) . . Modular model of the human CVS v.1 (DOI) (top)
- 11:36, 1 July 2013 (diff | hist) . . (+78) . . Overall circulation model (DOI)
- 11:34, 1 July 2013 (diff | hist) . . (+151) . . Genome browser (top)
- 11:33, 1 July 2013 (diff | hist) . . (0) . . Template:Doi (top)
- 11:33, 1 July 2013 (diff | hist) . . (+39) . . N Template:Doi (Created page with "doi:[http://dx.doi.org/{{{1}}}|{{{1}}}]")
- 13:04, 28 June 2013 (diff | hist) . . (-7) . . m BioUML workbench (-JRE)
- 12:27, 27 June 2013 (diff | hist) . . (0) . . m Sequence (element type) (top)
- 12:27, 27 June 2013 (diff | hist) . . (+349) . . Sequence (element type) (Pictures)
- 12:26, 27 June 2013 (diff | hist) . . (0) . . File:Sequence-example-ensembl.png (Lan@dote.ru uploaded a new version of "File:Sequence-example-ensembl.png": Info box filled) (top)
- 12:25, 27 June 2013 (diff | hist) . . (0) . . N File:Sequence-example-ensembl.png
- 12:19, 27 June 2013 (diff | hist) . . (0) . . File:Sequence-example-embl.png (Lan@dote.ru uploaded a new version of "File:Sequence-example-embl.png": CDS information displayed) (top)
- 12:17, 27 June 2013 (diff | hist) . . (0) . . N File:Sequence-example-embl.png
- 12:12, 27 June 2013 (diff | hist) . . (+766) . . N Sequence (element type) (Created page with "{{Element type|sequence|ru.biosoft.bsa.AnnotatedSequence}} === Description === '''Sequence''' element represents nucleotide or amino acid sequence from many different sources ...")
- 16:06, 26 June 2013 (diff | hist) . . (+5) . . m Table document (top)
- 16:02, 26 June 2013 (diff | hist) . . (+1,784) . . N Track (element type) (Created page with "{{Element type|track|ru.biosoft.bsa.Track}} {{Stub|pictures and more detailed track types information}} === Description === '''Track''' is an element which contains genomic fe...")
- 15:27, 26 June 2013 (diff | hist) . . (+29) . . m Databases (→See also)
- 15:26, 26 June 2013 (diff | hist) . . (+24) . . m Geneways (+Category:Databases) (top)
- 15:24, 26 June 2013 (diff | hist) . . (+24) . . m Reactome (+Category:Databases) (top)
- 15:24, 26 June 2013 (diff | hist) . . (+24) . . m Biopath (+Category:Databases)
- 15:24, 26 June 2013 (diff | hist) . . (+24) . . m Ensembl (+Category:Databases)
- 15:23, 26 June 2013 (diff | hist) . . (+24) . . Biomodels (+Category:Databases)
- 15:23, 26 June 2013 (diff | hist) . . (0) . . m Gene Ontology (Lan@dote.ru moved page Gene Ontology database to Gene Ontology)
- 15:23, 26 June 2013 (diff | hist) . . (+27) . . N Gene Ontology database (Lan@dote.ru moved page Gene Ontology database to Gene Ontology) (top)
- 15:23, 26 June 2013 (diff | hist) . . (+46) . . N Category:Databases (Created page with "List of databases supported by BioUML.") (top)
- 15:23, 26 June 2013 (diff | hist) . . (+24) . . Gene Ontology (+Category:Databases)
- 15:21, 26 June 2013 (diff | hist) . . (+84) . . Biomodels (+picture)
- 15:21, 26 June 2013 (diff | hist) . . (+50) . . N File:BioModels Aguda Cell Cycle.png (Redirected page to File:Diagram hierarchical layout.png) (top)
- 15:18, 26 June 2013 (diff | hist) . . (+2) . . Biomodels (Lucene search)
- 15:14, 26 June 2013 (diff | hist) . . (+917) . . Ensembl
- 15:07, 26 June 2013 (diff | hist) . . (+36) . . N Lucene search (Redirected page to Information box#Search) (top)
- 14:59, 26 June 2013 (diff | hist) . . (+26) . . Ensembl (+Ensembl installation)
- 14:57, 26 June 2013 (diff | hist) . . (0) . . m Ensembl (→See also)
- 15:53, 21 June 2013 (diff | hist) . . (0) . . m Repository pane (→See also)
- 10:22, 21 June 2013 (diff | hist) . . (-23) . . m Diagram (element type)
- 10:22, 21 June 2013 (diff | hist) . . (-2) . . m Diagram (element type)
- 16:57, 19 June 2013 (diff | hist) . . (+23) . . m BioUML web edition (+Category:Software)
- 16:40, 19 June 2013 (diff | hist) . . (+23) . . m BioUML server (+Category:Software)
- 16:38, 19 June 2013 (diff | hist) . . (+23) . . m BioUML workbench (+Category:Software)
- 16:38, 19 June 2013 (diff | hist) . . (+22) . . m GeneNet (+Category:Software) (top)
- 16:38, 19 June 2013 (diff | hist) . . (+22) . . m Transplorer (+Category:Software) (top)
- 16:38, 19 June 2013 (diff | hist) . . (+22) . . m MGL
- 16:37, 19 June 2013 (diff | hist) . . (+22) . . m TRRD (+Category:Software) (top)
- 16:37, 19 June 2013 (diff | hist) . . (+40) . . N Category:Software (Created page with "Software products described in this wiki") (top)
- 16:37, 19 June 2013 (diff | hist) . . (+23) . . m GeneXplain (+Category:Software)
- 14:49, 19 June 2013 (diff | hist) . . (+2) . . m Information box (Cosmetic) (top)
- 14:40, 19 June 2013 (diff | hist) . . (0) . . m Repository (Element type) (top)
- 14:39, 19 June 2013 (diff | hist) . . (-10) . . Repository
- 14:37, 19 June 2013 (diff | hist) . . (+557) . . N Element type (Created page with "'''Data elements''' you may see in BioUML repository have different types. Element type defines the following things: * Element icon; * Context menu actions associated wit...")
- 14:30, 19 June 2013 (diff | hist) . . (+9) . . Information box (file -> element)
- 14:17, 19 June 2013 (diff | hist) . . (0) . . m Graph search (→See also)
- 12:32, 18 June 2013 (diff | hist) . . (0) . . m Repository (→See also)
- 16:38, 17 June 2013 (diff | hist) . . (+21) . . N Projects (Lan@dote.ru moved page Projects to Project: Singular) (top)
- 16:38, 17 June 2013 (diff | hist) . . (0) . . m Project (Lan@dote.ru moved page Projects to Project: Singular)
- 16:37, 17 June 2013 (diff | hist) . . (+4) . . MediaWiki:Sidebar
- 16:37, 17 June 2013 (diff | hist) . . (0) . . MediaWiki:Sidebar
- 16:37, 17 June 2013 (diff | hist) . . (-1) . . BioUML
- 16:36, 17 June 2013 (diff | hist) . . (0) . . BioUML wiki
- 16:35, 17 June 2013 (diff | hist) . . (+2,243) . . N Repository (Created page with "'''BioUML repository''' (or simply '''repository''') is the central BioUML data storage place. Basically everything you're working with in BioUML is stored in the reposito...")
- 16:18, 17 June 2013 (diff | hist) . . (+48) . . N Template:Warning (Created page with "<span style="color:#C02020">'''WARNING'''</span>") (top)
- 16:18, 17 June 2013 (diff | hist) . . (+1,086) . . N Repository actions provider (extension point) (From Help&Manual) (top)
- 15:47, 17 June 2013 (diff | hist) . . (+2,731) . . N Element action (extension point) (Created page with "{{Extension point|elementAction|ru.biosoft.access|since=0.9.4|registry=ru.biosoft.access.repository.PluginActions}} ;Applicable for :BioUML workbench === Description === ...") (top)
- 15:34, 17 June 2013 (diff | hist) . . (+26) . . m Repository pane toolbar (+in BioUML web edition) (top)
- 15:29, 17 June 2013 (diff | hist) . . (+1,562) . . N Module type (extension point) (From Help&Manual) (top)
- 15:26, 17 June 2013 (diff | hist) . . (0) . . N File:NewDatabaseDialog.png (top)
- 15:19, 17 June 2013 (diff | hist) . . (+29) . . m Information box (+Category:User interface)
- 15:13, 17 June 2013 (diff | hist) . . (+5,673) . . N Function (extension point) (From Help&Manual) (top)
- 15:02, 17 June 2013 (diff | hist) . . (+1,326) . . N About dialog (extension point) (From Help&Manual) (top)
- 13:37, 17 June 2013 (diff | hist) . . (0) . . m Information box (→See also)
- 09:49, 17 June 2013 (diff | hist) . . (+31) . . m BioUML development history (+MCA link - →2012 - 2013)
- 18:21, 14 June 2013 (diff | hist) . . (-5) . . m Diagram (element type) (→See also)
- 17:52, 14 June 2013 (diff | hist) . . (0) . . m Grid layout (→See also)
- 17:51, 14 June 2013 (diff | hist) . . (-5) . . m Diagram document ({{Type link}} used - →See also)
- 17:48, 14 June 2013 (diff | hist) . . (+84) . . Diagram (element type) (+picture)
- 17:47, 14 June 2013 (diff | hist) . . (+892) . . N Diagram (element type) (Created page with "{{Element type|diagram|biouml.model.Diagram}} === Description === Diagram element represents a graph. It consists of nodes, edges and compartments (all of them are called as d...")
- 17:24, 14 June 2013 (diff | hist) . . (0) . . m Hierarchical layout (→See also)
- 17:23, 14 June 2013 (diff | hist) . . (0) . . m Cross cost grid layout (→See also)
- 16:16, 14 June 2013 (diff | hist) . . (-46) . . m Adaptive simulated annealing (analysis) (Reverted edits by Lan@dote.ru (talk) to last revision by BioUML wiki Bot) (top)
- 16:16, 14 June 2013 (diff | hist) . . (+46) . . Adaptive simulated annealing (analysis)
- 16:07, 14 June 2013 (diff | hist) . . (+5) . . m Category:Extension points (top)
- 16:04, 14 June 2013 (diff | hist) . . (+64) . . N Grid layout (Created page with "{{Layout algorithm|ru.biosoft.graph.FastGridLayouter}} {{stub}}")
- 16:03, 14 June 2013 (diff | hist) . . (+62) . . m Template:Layout algorithm (Usage) (top)
- 15:59, 14 June 2013 (diff | hist) . . (+4) . . Diagram document (Links to layout example pictures corrected - →Adjusting diagram layout)
- 15:59, 14 June 2013 (diff | hist) . . (0) . . m File:Diagram hierarchical layout.png (Lan@dote.ru moved page File:Diagram hierarchical view.png to File:Diagram hierarchical layout.png without leaving a redirect: For consistency) (top)
- 15:58, 14 June 2013 (diff | hist) . . (0) . . m File:Diagram orthogonal layout.png (Lan@dote.ru moved page File:Diagram orthogonal view.png to File:Diagram orthogonal layout.png without leaving a redirect: For consistency) (top)
- 15:58, 14 June 2013 (diff | hist) . . (-101) . . Orthogonal layout (Template used)
- 15:57, 14 June 2013 (diff | hist) . . (-113) . . Force directed layout (Template used) (top)
- 15:57, 14 June 2013 (diff | hist) . . (-94) . . Cross cost grid layout
- 15:55, 14 June 2013 (diff | hist) . . (-101) . . Hierarchical layout
- 15:55, 14 June 2013 (diff | hist) . . (+3) . . Template:Layout algorithm
- 15:54, 14 June 2013 (diff | hist) . . (+126) . . Template:Layout algorithm
- 15:52, 14 June 2013 (diff | hist) . . (+34) . . Template:Layout algorithm
- 15:51, 14 June 2013 (diff | hist) . . (+79) . . Template:Layout algorithm
- 15:50, 14 June 2013 (diff | hist) . . (-1) . . Template:Layout algorithm
- 15:49, 14 June 2013 (diff | hist) . . (+71) . . N Template:Layout algorithm (Created page with "<includeonly>{{PAGENAMEE}} Category:Layout algorithms</includeonly>")
- 15:46, 14 June 2013 (diff | hist) . . (+4) . . m Hierarchical layout (hierarchic -> hierarchical)
- 15:42, 14 June 2013 (diff | hist) . . (+28) . . m Research diagram (+Category:Diagram types) (top)
- 15:41, 14 June 2013 (diff | hist) . . (+67) . . N Category:Diagram types (Created page with "This category lists special types of BioUML {{Type link|diagram}}s.") (top)
- 15:41, 14 June 2013 (diff | hist) . . (+148) . . Workflow (+diagram type info and links)
- 15:37, 14 June 2013 (diff | hist) . . (+1,451) . . N Layout (extension point) (Created page with "{{Extension point|layout|ru.biosoft.graph|registry=ru.biosoft.graph.GraphPlugin}} === Description === This extension point allows you to register your own {{Type link|diagram}...") (top)
- 15:26, 14 June 2013 (diff | hist) . . (+134) . . Cross cost grid layout (+picture)
- 15:25, 14 June 2013 (diff | hist) . . (0) . . m Force directed layout (→See also)
- 15:25, 14 June 2013 (diff | hist) . . (+133) . . Force directed layout (+picture)
- 15:25, 14 June 2013 (diff | hist) . . (+123) . . Orthogonal layout (+image)
- 15:24, 14 June 2013 (diff | hist) . . (+124) . . Hierarchical layout
- 11:40, 14 June 2013 (diff | hist) . . (+60) . . N Category:Document types (Created page with "Types of documents which can be opened in document pane.") (top)
- 11:39, 14 June 2013 (diff | hist) . . (+29) . . m Diagram document (+Category:Document types)
- 11:39, 14 June 2013 (diff | hist) . . (+29) . . m Table document (+Category:Document types)
- 11:38, 14 June 2013 (diff | hist) . . (+29) . . BioUML development history (+Category:BioUML history)
- 11:37, 14 June 2013 (diff | hist) . . (+81) . . N Category:BioUML history (Created page with "Pages related to BioUML history including software on which BioUML was based.") (top)
- 11:37, 14 June 2013 (diff | hist) . . (+29) . . m Transplorer (+Category:BioUML history)
- 11:36, 14 June 2013 (diff | hist) . . (+29) . . m TRRD (+Category:BioUML history)
- 11:36, 14 June 2013 (diff | hist) . . (+29) . . m GeneNet (+Category:BioUML history)
- 11:36, 14 June 2013 (diff | hist) . . (+29) . . m MGL (+Category:BioUML history)
- 11:34, 14 June 2013 (diff | hist) . . (+171) . . N Category:Layout algorithms (Created page with "Layout algorithms are algorithms for {{Type link|diagram}} layouting. They are registered in BioUML code via layout extension point.") (top)
- 11:33, 14 June 2013 (diff | hist) . . (+32) . . m Force directed layout (+Category:Layout algorithms)
- 11:32, 14 June 2013 (diff | hist) . . (+32) . . m Hierarchical layout (+Category:Layout algorithms)
- 11:32, 14 June 2013 (diff | hist) . . (+32) . . m Cross cost grid layout (+Category:Layout algorithms)
- 13:55, 13 June 2013 (diff | hist) . . (0) . . m Ensembl installation (commons-net-3.2.jar -> commons-net-3.3.jar)
- 18:05, 11 June 2013 (diff | hist) . . (+31) . . Databases installation (top)
- 18:05, 11 June 2013 (diff | hist) . . (-5) . . m GO installation (s/Ensembl/GO/)
- 18:05, 11 June 2013 (diff | hist) . . (+139) . . GO installation (+Lucene indexes info)
- 18:04, 11 June 2013 (diff | hist) . . (-3) . . Ensembl installation (→Notes)
- 18:04, 11 June 2013 (diff | hist) . . (+2,150) . . N Ensembl installation (Created page with "This page describes how to install Ensembl database and integrate it with BioUML server or BioUML workbench. The information described here is valid for BioUML 0.9.5 a...")
- 17:47, 11 June 2013 (diff | hist) . . (+27) . . Databases installation (+Ensembl installation)
- 17:39, 11 June 2013 (diff | hist) . . (0) . . Template:GeneXplain current version (top)
- 17:38, 11 June 2013 (diff | hist) . . (0) . . Template:BioUML current version
- 10:40, 10 June 2013 (diff | hist) . . (-10) . . m Repository pane (-{{Stub}})
- 10:39, 10 June 2013 (diff | hist) . . (-5) . . m Table document ({{Type link}} used)
- 17:41, 7 June 2013 (diff | hist) . . (+20) . . m Diagram document (Viewparts link corrected)
- 09:54, 7 June 2013 (diff | hist) . . (0) . . File:Insertin2dia icon.png (Lan@dote.ru uploaded a new version of "File:Insertin2dia icon.png") (top)
- 09:54, 7 June 2013 (diff | hist) . . (0) . . File:Recalculate doc icon.png (Lan@dote.ru uploaded a new version of "File:Recalculate doc icon.png") (top)
- 09:54, 7 June 2013 (diff | hist) . . (0) . . File:Recalculate doc icon.png (Lan@dote.ru uploaded a new version of "File:Recalculate doc icon.png")
- 09:52, 7 June 2013 (diff | hist) . . (-35) . . m BioUML user interface ("20px" removed - →Viewparts area)
- 09:50, 7 June 2013 (diff | hist) . . (0) . . File:View separately icon.png (Lan@dote.ru uploaded a new version of "File:View separately icon.png") (top)
- 09:50, 7 June 2013 (diff | hist) . . (0) . . File:Edit description icon.png (Lan@dote.ru uploaded a new version of "File:Edit description icon.png") (top)
- 09:49, 7 June 2013 (diff | hist) . . (0) . . File:Search icon.png (Lan@dote.ru uploaded a new version of "File:Search icon.png") (top)
- 09:49, 7 June 2013 (diff | hist) . . (0) . . File:Add element icon.png (Lan@dote.ru uploaded a new version of "File:Add element icon.png") (top)
- 09:49, 7 June 2013 (diff | hist) . . (0) . . File:Discard icon.png (Lan@dote.ru uploaded a new version of "File:Discard icon.png") (top)
- 09:49, 7 June 2013 (diff | hist) . . (0) . . File:Execute icon.png (Lan@dote.ru uploaded a new version of "File:Execute icon.png") (top)
- 09:48, 7 June 2013 (diff | hist) . . (0) . . File:Add2docpane icon.png (Lan@dote.ru uploaded a new version of "File:Add2docpane icon.png") (top)
- 09:48, 7 June 2013 (diff | hist) . . (0) . . File:Add2newdia icon.png (Lan@dote.ru uploaded a new version of "File:Add2newdia icon.png") (top)
- 09:47, 7 June 2013 (diff | hist) . . (0) . . File:Stop icon.png (Lan@dote.ru uploaded a new version of "File:Stop icon.png") (top)
- 09:47, 7 June 2013 (diff | hist) . . (0) . . File:Accept2viewparts icon.png (Lan@dote.ru uploaded a new version of "File:Accept2viewparts icon.png") (top)
- 09:46, 7 June 2013 (diff | hist) . . (0) . . File:Add2clipboard icon.png (Lan@dote.ru uploaded a new version of "File:Add2clipboard icon.png") (top)
- 09:42, 7 June 2013 (diff | hist) . . (+19) . . m Table document (Viewparts link - →Adjusting table structure)
- 17:45, 6 June 2013 (diff | hist) . . (+15) . . m Repository pane (Links - →Handling files)
- 17:40, 6 June 2013 (diff | hist) . . (+14) . . m Reference type (Link to table element) (top)
- 17:39, 6 June 2013 (diff | hist) . . (+1,859) . . N Table (element type) (Created page with "{{Element type|table|ru.biosoft.table.TableDataCollection}} === Description === Table element represents a two-dimensional table. You may view the table as a [[table document]...")
- 16:41, 6 June 2013 (diff | hist) . . (+600) . . N Document pane (Created page with "[[BioUML web edition interface. Document pane is marked as (B).]] [[BioUML workbench interface. D...")
- 16:40, 4 June 2013 (diff | hist) . . (+21) . . m Modular model of the human CVS v.2
- 16:33, 4 June 2013 (diff | hist) . . (+14) . . m Creating Galaxy tool (Type link|folder - →Customizing tools menu)
- 16:00, 4 June 2013 (diff | hist) . . (+31) . . BioUML wiki Bot (+Template:Reference types) (top)
- 15:58, 4 June 2013 (diff | hist) . . (+46) . . m Repository pane toolbar (+BioUML user interface)
- 15:57, 4 June 2013 (diff | hist) . . (+28) . . m Viewpart (+BioUML user interface) (top)
- 15:57, 4 June 2013 (diff | hist) . . (+46) . . m Repository pane (+BioUML user interface)
- 15:57, 4 June 2013 (diff | hist) . . (+46) . . m General control panel (+BioUML user interface) (top)
- 15:52, 4 June 2013 (diff | hist) . . (+67) . . BioUML wiki Bot (+new templates)
- 15:49, 4 June 2013 (diff | hist) . . (+144) . . Repository pane toolbar (+{{Web tree actions}})
- 15:47, 4 June 2013 (diff | hist) . . (+33) . . m Perspective (general control panel) (top)
- 15:46, 4 June 2013 (diff | hist) . . (+1,118) . . N General control panel (Created page with "[[BioUML web edition interface. General control panel is marked as (E).]] [[BioUML workbench inte...")
- 15:40, 4 June 2013 (diff | hist) . . (+4) . . m BioUML user interface (general control panel)
- 15:36, 4 June 2013 (diff | hist) . . (+124) . . BioUML user interface (+Tree & toolbar actions)
- 15:06, 4 June 2013 (diff | hist) . . (-19) . . Reference type
- 11:14, 4 June 2013 (diff | hist) . . (+17) . . m Simulation (Link fixed - →ODE Simulation Engine)
- 11:13, 4 June 2013 (diff | hist) . . (+17) . . m Simulation (Link fixed - →Agent-based Simualtion Engine)
- 11:00, 4 June 2013 (diff | hist) . . (+281) . . m BioUML development history (Links - →2010)
- 10:56, 4 June 2013 (diff | hist) . . (+3) . . m BioUML development history ({{R}} - →2009)
- 10:55, 4 June 2013 (diff | hist) . . (+4) . . m BioUML development history (BioUML link)
- 10:52, 4 June 2013 (diff | hist) . . (+156) . . m BioUML development history (Links - →2011)
- 18:05, 3 June 2013 (diff | hist) . . (+5) . . m BioUML development history (Workflows link - →2011)
- 16:58, 3 June 2013 (diff | hist) . . (+22) . . GeneNet (→User interface)
- 16:55, 3 June 2013 (diff | hist) . . (+12) . . m MGL (TRRD, {{EPD}} used)
- 16:54, 3 June 2013 (diff | hist) . . (-22) . . GeneNet
- 16:54, 3 June 2013 (diff | hist) . . (+29) . . N Template:EPD (Link to EPD database) (top)
- 16:53, 3 June 2013 (diff | hist) . . (+44) . . m MGL (Links - →MGL possibilities)
- 16:52, 3 June 2013 (diff | hist) . . (-111) . . m GeneNet (Links rectified)
- 16:46, 3 June 2013 (diff | hist) . . (-204) . . Transplorer
- 16:46, 3 June 2013 (diff | hist) . . (+114) . . N Template:TRANSFAC (Link to TRANSFAC) (top)
- 16:35, 3 June 2013 (diff | hist) . . (+256) . . Perspective (+Perspectives gallery)
- 16:24, 3 June 2013 (diff | hist) . . (+897) . . N Analyses (extension point) (Created page with "{{Extension point|analyses|ru.biosoft.galaxy|since=0.9.3|registry=ru.biosoft.galaxy.AnalysesOverridesRegistry}} === Description === This extension point currently allows to hi...") (top)
- 16:19, 3 June 2013 (diff | hist) . . (+12) . . TRRD viewer (Redirected page to TRRD#TRRD-Viewer) (top)
- 16:18, 3 June 2013 (diff | hist) . . (+21) . . m TRRD (TRRD-Viewer sub-section)
- 16:17, 3 June 2013 (diff | hist) . . (0) . . m TRRD (Lan@dote.ru moved page TRRD viewer to TRRD: This page is devoted not only to TRRD viewer, but to TRRD database as well.)
- 16:17, 3 June 2013 (diff | hist) . . (+18) . . N TRRD viewer (Lan@dote.ru moved page TRRD viewer to TRRD: This page is devoted not only to TRRD viewer, but to TRRD database as well.)
- 16:15, 3 June 2013 (diff | hist) . . (+2) . . m GeneNet (TRRD linked - →Formalized description)
- 16:08, 3 June 2013 (diff | hist) . . (+40) . . Transplorer (File formats linked)
- 16:02, 3 June 2013 (diff | hist) . . (+2,599) . . N Types (extension point) (Created page with "{{Extension point|types|ru.biosoft.galaxy|since=0.9.3|registry=ru.biosoft.galaxy.FormatRegistry}} === Description === This extension point allows to map {{Galaxy}} data types ...") (top)
- 11:09, 31 May 2013 (diff | hist) . . (+43) . . m MGL
- 11:07, 31 May 2013 (diff | hist) . . (+17) . . N Molecular Genetics Library (Redirected page to MGL) (top)
- 17:40, 30 May 2013 (diff | hist) . . (+1,065) . . N Folder (element type) (Created page with "{{Element type|folder|ru.biosoft.access.generic.GenericDataCollection}} === Description === [[File:Type-folder-new-folder-creation-web.png|thumb|"New folder" option in right-c...") (top)
- 17:32, 30 May 2013 (diff | hist) . . (0) . . N File:Type-folder-new-folder-creation-web.png (top)
- 15:29, 30 May 2013 (diff | hist) . . (+31) . . m Download (Reformatted (list restored))
- 10:12, 30 May 2013 (diff | hist) . . (0) . . N File:MGLsystem.png (top)
- 10:12, 30 May 2013 (diff | hist) . . (0) . . m MGL (MGLsystem.gif -> MGLsystem.png)
- 10:51, 28 May 2013 (diff | hist) . . (+35) . . Method description HTML file (+DL, DT, DD for definition lists) (top)
- 11:18, 20 May 2013 (diff | hist) . . (+81) . . BioHub (+Biohub (extension point)) (top)
- 11:17, 20 May 2013 (diff | hist) . . (+2,791) . . N Biohub (extension point) (Created page with "{{Extension point|biohub|ru.biosoft.access|registry=ru.biosoft.access.biohub.BioHubRegistry}} === Description === This extension point allows you to register a BioHub. ==...") (top)
- 17:41, 17 May 2013 (diff | hist) . . (-17) . . BioUML user interface
- 17:41, 17 May 2013 (diff | hist) . . (-17) . . GeneXplain (wikipedia: namespace used)
- 17:40, 17 May 2013 (diff | hist) . . (-17) . . m BioUML server (wikipedia: namespace used)
- 17:40, 17 May 2013 (diff | hist) . . (-34) . . BioUML workbench
- 17:37, 17 May 2013 (diff | hist) . . (-34) . . m Workflow (wikipedia: namespace used)
- 17:35, 17 May 2013 (diff | hist) . . (-53) . . Workflow (wikipedia: namespace used)
- 17:34, 17 May 2013 (diff | hist) . . (-30) . . m Features (wikipedia: namespace used)
- 17:33, 17 May 2013 (diff | hist) . . (-171) . . BioUML
- 17:28, 17 May 2013 (diff | hist) . . (-34) . . BioUML web edition (wikipedia: namespace used)
- 17:23, 17 May 2013 (diff | hist) . . (+128) . . m Profile (element type) (+Site search on track (analysis)) (top)
- 17:21, 17 May 2013 (diff | hist) . . (+596) . . N Profile (element type) (Created page with "{{Element type|profile|ru.biosoft.bsa.SiteModelCollection}} === Description === Profile is the collection of {{Type link|site model}}s. Usually it's preinstalled in some datab...")
- 17:21, 17 May 2013 (diff | hist) . . (0) . . N File:Type-profile-web-table-editing.png (top)
- 17:15, 17 May 2013 (diff | hist) . . (+1) . . m Site model (element type) (Cosmetic - →Description) (top)
- 17:14, 17 May 2013 (diff | hist) . . (+50) . . m Site model (element type) (Picture label changed)
- 17:13, 17 May 2013 (diff | hist) . . (0) . . N File:Type-site-model-info-box-web.png (top)
- 17:11, 17 May 2013 (diff | hist) . . (+149) . . Site model (element type) (+Change profile cutoffs (analysis))
- 17:08, 17 May 2013 (diff | hist) . . (+1,056) . . N Site model (element type) (Created page with "{{Element type|site model|ru.biosoft.bsa.SiteModel}} === Description === Site model description exampleSite model is the mathem...")
- 17:04, 17 May 2013 (diff | hist) . . (-72) . . Matrix (element type) (-Create weight matrix model) (top)
- 16:52, 17 May 2013 (diff | hist) . . (+67) . . m Template:Type link (Usage) (top)
- 16:52, 17 May 2013 (diff | hist) . . (+536) . . N Matrix library (element type) (Created page with "{{Element type|matrix library|ru.biosoft.bsa.analysis.WeightMatrixCollection}} === Description === Matrix library is the collection of {{Type link|matrix|matrices}}. Usually i...") (top)
- 16:50, 17 May 2013 (diff | hist) . . (0) . . N File:Type-matrix-library-web-table.png (top)
- 16:43, 17 May 2013 (diff | hist) . . (+17) . . Matrix (element type)
- 16:42, 17 May 2013 (diff | hist) . . (+8) . . Template:Type link
- 16:38, 17 May 2013 (diff | hist) . . (+20) . . m Matrix (element type) (+Description headline)
- 16:32, 17 May 2013 (diff | hist) . . (-38) . . Matrix (element type) ({{Type link}} used)
- 16:31, 17 May 2013 (diff | hist) . . (-10) . . File (element type) ({{Type link}} used) (top)
- 16:30, 17 May 2013 (diff | hist) . . (-28) . . Galaxy method (element type) ({{Type link}} used) (top)
- 16:30, 17 May 2013 (diff | hist) . . (+2) . . m Template:Type link (Fix)
- 16:29, 17 May 2013 (diff | hist) . . (+240) . . N Template:Type link (Created page with "<noinclude>Link to element type with icon. Usage: <nowiki>{{Type link|<type_name>}}</nowiki></noinclude><includeonly>[[File:Type-{{#replace:{{{1}}...")
- 16:15, 17 May 2013 (diff | hist) . . (0) . . N File:Type-matrix-info-box-example.png (top)
- 16:15, 17 May 2013 (diff | hist) . . (+111) . . Matrix (element type)
- 15:52, 17 May 2013 (diff | hist) . . (+946) . . N Matrix (element type) (Created page with "{{Element type|matrix|ru.biosoft.bsa.analysis.FrequencyMatrix}} Matrix element type represents a position weight matrix (PWM) wh...")
- 10:18, 17 May 2013 (diff | hist) . . (-1) . . m Perspective (Typo fixed - →Development)
- 10:13, 17 May 2013 (diff | hist) . . (+495) . . N Galaxy method (element type) (Created page with "{{Element type|galaxy method|ru.biosoft.galaxy.GalaxyMethodInfo}} === Description === This is a special subtype of analysis element type which is d...")
- 10:09, 17 May 2013 (diff | hist) . . (+17) . . Template:Element type (top)
- 18:04, 16 May 2013 (diff | hist) . . (+1,190) . . N Analysis (element type) (Created page with "{{Element type|analysis|ru.biosoft.analysis.AnalysisMethodInfo}} === Description === This element represents BioUML analysis method. Usually it has different icon as it's ...") (top)
- 18:03, 16 May 2013 (diff | hist) . . (0) . . File:Type-analysis-screenshot-workbench.png (Lan@dote.ru uploaded a new version of "File:Type-analysis-screenshot-workbench.png") (top)
- 18:02, 16 May 2013 (diff | hist) . . (0) . . N File:Type-analysis-screenshot-workbench.png
- 17:58, 16 May 2013 (diff | hist) . . (0) . . File:Type-analysis-screenshot-web.png (Lan@dote.ru uploaded a new version of "File:Type-analysis-screenshot-web.png") (top)
- 17:55, 16 May 2013 (diff | hist) . . (0) . . N File:Type-analysis-screenshot-web.png
- 17:10, 16 May 2013 (diff | hist) . . (+1) . . m Autosome.Ru (workflows link fixed) (top)
- 17:09, 16 May 2013 (diff | hist) . . (+59) . . Autosome.Ru (+workflows)
- 16:06, 16 May 2013 (diff | hist) . . (+133) . . BioUML wiki Bot
- 16:01, 16 May 2013 (diff | hist) . . (+24) . . m Autosome.Ru (+Category:Companies)
- 16:01, 16 May 2013 (diff | hist) . . (0) . . Softberry, Inc. (top)
- 16:00, 16 May 2013 (diff | hist) . . (0) . . N File:Softberry logo.png (top)
- 16:00, 16 May 2013 (diff | hist) . . (+33) . . Softberry, Inc.
- 15:58, 16 May 2013 (diff | hist) . . (+87) . . Softberry, Inc. (+plugins category link)
- 15:48, 16 May 2013 (diff | hist) . . (+31) . . BioUML user interface (+See also: Perspective link)
- 15:47, 16 May 2013 (diff | hist) . . (+4) . . m Softberry (perspective) (perspective) (top)
- 15:47, 16 May 2013 (diff | hist) . . (+4) . . m GTRD (perspective) (perspective) (top)
- 15:47, 16 May 2013 (diff | hist) . . (+4) . . m ChIPMunk (perspective) (perspective) (top)
- 15:46, 16 May 2013 (diff | hist) . . (+4) . . Default (perspective) (top)
- 15:46, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-Default-web.png (top)
- 15:46, 16 May 2013 (diff | hist) . . (+164) . . N Default (perspective) (Created page with "{{Perspective|Default|provider=Institute of Systems Biology}} This perspective is used by default. Standard repository tabs and all viewparts are available.")
- 15:43, 16 May 2013 (diff | hist) . . (+67) . . Perspective
- 15:43, 16 May 2013 (diff | hist) . . (+285) . . N Softberry, Inc. (Created page with "{{Stub}} '''Softberry Inc.''' is a leading developer of software tools for genomic research. === Contacts === ;Web-site :http://softberry.com/ ;Postal address :116 Radio Cir...")
- 15:40, 16 May 2013 (diff | hist) . . (+20) . . Template:Perspective (top)
- 15:39, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-GTRD-web.png (top)
- 15:38, 16 May 2013 (diff | hist) . . (+131) . . N GTRD (perspective) (Created page with "{{Perspective|GTRD|provider=Institute of Systems Biology}} This perspective was created for convenient work with GTRD database.")
- 15:35, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-Softberry-web.png (top)
- 15:35, 16 May 2013 (diff | hist) . . (+107) . . N Softberry (perspective) (Created page with "{{Perspective|Softberry|provider=Softberry, Inc.}} This perspective was created to support Softberry tools.")
- 15:30, 16 May 2013 (diff | hist) . . (+180) . . Template:Perspective
- 15:28, 16 May 2013 (diff | hist) . . (+21) . . ChIPMunk (perspective)
- 15:27, 16 May 2013 (diff | hist) . . (+10) . . ChIPMunk (perspective) (Link fixed)
- 15:27, 16 May 2013 (diff | hist) . . (+31) . . N Category:Perspectives (Created page with "List of known perspectives.") (top)
- 15:26, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-ChIPMunk-web.png (top)
- 15:26, 16 May 2013 (diff | hist) . . (+118) . . N ChIPMunk (perspective) (Created page with "{{Perspective|ChIPMunk}} This perspective was created to focus on the ChIPMunk analyses.")
- 15:25, 16 May 2013 (diff | hist) . . (+226) . . N Template:Perspective (Created page with "<noinclude>Usage: <nowiki>{{Perspective|<perspective_name>}}</nowiki></noinclude><includeonly>[[File:perspective-{{{1}}}-web.png|thumb|[[BioUML web edition]] with {{{1}}} per...")
- 15:12, 16 May 2013 (diff | hist) . . (+68) . . Host object (extension point) (+link to list of host objects) (top)
- 14:59, 16 May 2013 (diff | hist) . . (+66) . . N Category:Host objects (Created page with "List of JavaScript host objects.") (top)
- 11:04, 16 May 2013 (diff | hist) . . (+281) . . N Html (element type) (Created page with "{{Element type|html|ru.biosoft.access.HtmlDataElement}} === Description === This type represents HTML file. In BioUML you can import, export or view them (bu...") (top)
- 10:55, 16 May 2013 (diff | hist) . . (+120) . . Perspective (extension point)
- 10:53, 16 May 2013 (diff | hist) . . (+3,055) . . N Perspective (extension point) (Created page with "{{Extension point|perspective|biouml.workbench|since=0.9.3|registry=biouml.workbench.perspective.PerspectiveRegistry}} === Description === This extension point allows you to a...")
- 10:31, 16 May 2013 (diff | hist) . . (+53) . . Perspective
- 10:30, 16 May 2013 (diff | hist) . . (+14) . . Template:Stub
- 10:29, 16 May 2013 (diff | hist) . . (+70) . . Perspective (+If this select box is absent, then only one perspective is available.)
- 10:25, 16 May 2013 (diff | hist) . . (+1,009) . . N Perspective (Created page with "{{Stub}} '''Perspective''' is a set of user interface settings which change the outlook of BioUML workbench or BioUML web edition so the user can concentrate on the s...")
- 10:22, 16 May 2013 (diff | hist) . . (0) . . File:Perspective-selection-web.png (Lan@dote.ru uploaded a new version of "File:Perspective-selection-web.png") (top)
- 10:21, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-selection-workbench.png (top)
- 10:21, 16 May 2013 (diff | hist) . . (0) . . N File:Perspective-selection-web.png
- 10:39, 15 May 2013 (diff | hist) . . (+1,284) . . N Reference type (Created page with "'''Reference type''' is a sort of accession numbers of any biological objects which may be handled by BioUML. An example of reference type is [[Genes - Ensembl|Ensembl gen...")
- 10:36, 15 May 2013 (diff | hist) . . (-736) . . Reference type (extension point) (Reference types information is moved to separate page.) (top)
- 18:11, 14 May 2013 (diff | hist) . . (+53) . . N Category:Reference types (Created page with "List of reference types registered in BioUML.") (top)
- 11:10, 14 May 2013 (diff | hist) . . (+1,031) . . N BioHub (Created page with "{{Stub}} '''BioHub''' is a general concept in BioUML. It represents some functional entity which is able to match biological objects to some other objects using some matc...")
- 11:03, 14 May 2013 (diff | hist) . . (+36) . . N Category:BioHub (Created page with "Pages related to BioHub concept.") (top)
- 11:03, 14 May 2013 (diff | hist) . . (+391) . . N Matching BioHub (Created page with "{{Stub}} '''Matching BioHub''' is a kind of BioHub which allows you to match a list of identifiers from one reference type to another...")
- 10:57, 14 May 2013 (diff | hist) . . (+1,487) . . N Annotation (extension point) (From Help&Manual) (top)
- 10:49, 14 May 2013 (diff | hist) . . (+10) . . Preprocessor (extension point) (→Configuration Markup) (top)
- 10:49, 14 May 2013 (diff | hist) . . (+979) . . N Preprocessor (extension point) (From Help&Manual)
- 10:44, 14 May 2013 (diff | hist) . . (+996) . . N Type driver (extension point) (From Help&Manual) (top)
- 10:38, 14 May 2013 (diff | hist) . . (+952) . . N Virtual collection (extension point) (Created page with "{{Extension point|virtualCollection|ru.biosoft.access|since=0.9.3}} === Description === Virtual collection is root data collection which contains links to another collections....") (top)
- 10:26, 14 May 2013 (diff | hist) . . (+2) . . Text (element type) (<gallery> fixed - →Description) (top)
- 10:26, 14 May 2013 (diff | hist) . . (+456) . . N Text (element type) (Created page with "{{Element type|text|ru.biosoft.access.TextDataElement}} === Description === This is a generic text file which format is unknown for BioUML. You can import these files usin...")
- 10:25, 14 May 2013 (diff | hist) . . (0) . . N File:Type-text-web-editing.png (top)
- 10:18, 14 May 2013 (diff | hist) . . (+171) . . File (element type) (text element note added)
- 10:15, 14 May 2013 (diff | hist) . . (0) . . File:Type-file-reimport.png (Lan@dote.ru uploaded a new version of "File:Type-file-reimport.png") (top)
- 10:15, 14 May 2013 (diff | hist) . . (0) . . N File:Type-file-reimport.png
- 10:15, 14 May 2013 (diff | hist) . . (+506) . . File (element type) (Reimport described)
- 18:29, 13 May 2013 (diff | hist) . . (0) . . File (element type) (→Description)
- 18:27, 13 May 2013 (diff | hist) . . (+427) . . N File (element type) (Created page with "{{Element type|file|ru.biosoft.access.FileDataElement}} === Description === This is a generic file element which format is unknown for BioUML. It can be imported or export...")
- 18:09, 13 May 2013 (diff | hist) . . (-17) . . MediaWiki:Sidebar
- 18:06, 13 May 2013 (diff | hist) . . (+6) . . MediaWiki:Sidebar
- 18:05, 13 May 2013 (diff | hist) . . (-16) . . MediaWiki:Sidebar
- 18:05, 13 May 2013 (diff | hist) . . (+47) . . MediaWiki:Sidebar
- 17:58, 13 May 2013 (diff | hist) . . (+32) . . BioUML wiki (+Plugins - →For administrators/developers)
- 17:55, 13 May 2013 (diff | hist) . . (+1,903) . . N Transformer (extension point) (Created page with "{{Extension point|transformer|ru.biosoft.access|registry=ru.biosoft.access.generic.TransformerRegistry}} === Description === Transformer classes should be registered if you wa...")
- 17:41, 13 May 2013 (diff | hist) . . (-12) . . m Context item (extension point) (Formatting - →Configuration Markup) (top)
- 17:41, 13 May 2013 (diff | hist) . . (+1,163) . . N Context item (extension point) (Created page with "{{Extension point|template|ru.biosoft.templates|since=0.8.7|registry=ru.biosoft.templates.TemplateRegistry}} === Description === This extension allows you to add objects which...")
- 17:35, 13 May 2013 (diff | hist) . . (+27) . . Template (extension point) (top)
- 17:08, 13 May 2013 (diff | hist) . . (+35) . . Template (extension point) (Formatting - →Examples)
- 17:08, 13 May 2013 (diff | hist) . . (+3) . . m Template (extension point) (Formatting)
- 17:02, 13 May 2013 (diff | hist) . . (+1,258) . . N Template (extension point) (Created page with "{{Extension point|template|ru.biosoft.templates|since=0.8.7|registry=ru.biosoft.templates.TemplateRegistry}} === Description === Templates allows to get different view for dat...")
- 16:58, 13 May 2013 (diff | hist) . . (+1,181) . . N Wizard page (extension point) (From Help&Manual)
- 16:57, 13 May 2013 (diff | hist) . . (0) . . N File:Workbench-wizard-page-screenshot.png (top)
- 16:54, 13 May 2013 (diff | hist) . . (+36) . . Visible plugin (extension point) (+registry) (top)
- 16:53, 13 May 2013 (diff | hist) . . (+10) . . Visible plugin (extension point)
- 16:53, 13 May 2013 (diff | hist) . . (+1,385) . . N Visible plugin (extension point) (From Help&Manual)
- 16:43, 13 May 2013 (diff | hist) . . (-10) . . BioUML (-{{Stub}})
- 16:14, 13 May 2013 (diff | hist) . . (+56) . . Beans (extension point) (top)
- 16:13, 13 May 2013 (diff | hist) . . (+241) . . N Template:Method (Created page with "<noinclude>Usage: <nowiki>{{Method|<fully_qualified_Java_method_name>}}</nowiki> </noinclude><includeonly><code title="{{{1}}}" style="border-bottom: 1px dotted black">{{#exp...") (top)
- 16:12, 13 May 2013 (diff | hist) . . (+18) . . Moved class (extension point) ({{Method}}) (top)
- 16:10, 13 May 2013 (diff | hist) . . (-3) . . Template:Element type
- 16:09, 13 May 2013 (diff | hist) . . (+50) . . m Common class (extension point) ({{Class}})
- 16:07, 13 May 2013 (diff | hist) . . (+75) . . Template:Annotation (top)
- 16:06, 13 May 2013 (diff | hist) . . (+40) . . Template:Class (top)
- 16:05, 13 May 2013 (diff | hist) . . (+16) . . Template:Class
- 16:04, 13 May 2013 (diff | hist) . . (-3) . . m Beans (extension point) ({{Class}})
- 16:03, 13 May 2013 (diff | hist) . . (+18) . . Template:Class
- 15:57, 13 May 2013 (diff | hist) . . (+10) . . Service (extension point) ({{Class}}) (top)
- 15:57, 13 May 2013 (diff | hist) . . (+10) . . m Host object (extension point) ({{Annotation}})
- 15:56, 13 May 2013 (diff | hist) . . (+144) . . N Template:Annotation (Created page with "<noinclude>Usage: <nowiki>{{Annotation|<fully_qualified_Java_class_name>}}</nowiki> </noinclude><includeonly><code>{{{1}}}</code></includeonly>")
- 15:56, 13 May 2013 (diff | hist) . . (+33) . . Reference type (extension point)
- 15:54, 13 May 2013 (diff | hist) . . (-187) . . Method (extension point) ({{Class}})
- 15:53, 13 May 2013 (diff | hist) . . (+33) . . m Host object (extension point) ({{Class}})
- 15:51, 13 May 2013 (diff | hist) . . (+75) . . m Export (extension point) ({{Class}}) (top)
- 15:50, 13 May 2013 (diff | hist) . . (-3) . . m Diagram view part (extension point) ({{Class}})
- 15:50, 13 May 2013 (diff | hist) . . (-3) . . Diagram view part (extension point) ({{Class}})
- 15:49, 13 May 2013 (diff | hist) . . (-3) . . m Common class (extension point) ({{Class}})
- 15:48, 13 May 2013 (diff | hist) . . (+9) . . Template:Extension point (top)
- 15:48, 13 May 2013 (diff | hist) . . (+2,524) . . N Beans (extension point) (Created page with "{{Extension point|beans|ru.biosoft.access|since=0.9.4|registry=ru.biosoft.access.BeanRegistry}} === Description === This extension point allows you to resolve Java objects by ...")
- 15:46, 13 May 2013 (diff | hist) . . (+139) . . N Template:Class (Created page with "<noinclude>Usage: <nowiki>{{Class|<fully_qualified_Java_class_name>}}</nowiki> </noinclude><includeonly><code>{{{1}}}</code></includeonly>")
- 12:44, 13 May 2013 (diff | hist) . . (0) . . File:Type-image-web-cma-histogram.png (Lan@dote.ru uploaded a new version of "File:Type-image-web-cma-histogram.png": Browser UI cropped) (top)
- 11:29, 13 May 2013 (diff | hist) . . (+4) . . m Image (element type) (repository) (top)
- 11:21, 13 May 2013 (diff | hist) . . (+2) . . Image (element type)
- 11:20, 13 May 2013 (diff | hist) . . (0) . . N File:Type-image-web-cma-histogram.png
- 11:20, 13 May 2013 (diff | hist) . . (+209) . . Image (element type)
- 11:14, 13 May 2013 (diff | hist) . . (0) . . N File:Type-image-workbench-venn-diagram.png (top)
- 11:13, 13 May 2013 (diff | hist) . . (+171) . . Image (element type)
- 11:05, 13 May 2013 (diff | hist) . . (+67) . . N Category:Element types (Created page with "Types of elements which appear in BioUML repository.")
- 11:05, 13 May 2013 (diff | hist) . . (+248) . . Image (element type)
- 11:02, 13 May 2013 (diff | hist) . . (+35) . . Image (element type)
- 11:01, 13 May 2013 (diff | hist) . . (+42) . . Template:Element type
- 11:01, 13 May 2013 (diff | hist) . . (+22) . . N Image (element type) (Created page with "{{Element type|image}}")
- 11:01, 13 May 2013 (diff | hist) . . (+2) . . Template:Element type
- 10:59, 13 May 2013 (diff | hist) . . (+238) . . N Template:Element type (Created page with "<noinclude> == Usage == Add once at the top of extension point page: <nowiki>{{Element type|<type name>}}</nowiki> </noinclude> <includeonly>__NOTOC__ [[Category:Element type...")
- 10:56, 13 May 2013 (diff | hist) . . (-258) . . Common class (extension point) (Added info about Template:Element types generation.)
- 18:41, 8 May 2013 (diff | hist) . . (+18) . . BioUML user interface (→List of icons)
- 17:07, 8 May 2013 (diff | hist) . . (+2,490) . . N Reference type (extension point) (Created page with "{{Extension point|referenceType|ru.biosoft.access|registry=ru.biosoft.access.biohub.ReferenceTypeRegistry}} === Description === This extension point allows you to define new t...")
- 16:32, 8 May 2013 (diff | hist) . . (-84) . . BioUML user interface (See also section removed (all links are already present on the page))
- 16:30, 8 May 2013 (diff | hist) . . (+108) . . Viewpart
- 16:29, 8 May 2013 (diff | hist) . . (+117) . . Repository pane toolbar
- 16:28, 8 May 2013 (diff | hist) . . (+110) . . Repository pane
- 16:27, 8 May 2013 (diff | hist) . . (+941) . . N Service (extension point) (Created page with "{{Extension point|service|ru.biosoft.server}} === Description === Service is the way to communicate between BioUML client and BioUML server. Standard BioUML services are A...")
- 16:21, 8 May 2013 (diff | hist) . . (-2) . . Template:Extension point
- 16:21, 8 May 2013 (diff | hist) . . (+731) . . N Solver (extension point) (Created page with "{{Extension point|solver|biouml.plugins.simulation}} === Description === This extension point allows to define new solver for model simulation. === Configuration Markup === ...") (top)
- 16:18, 8 May 2013 (diff | hist) . . (-1) . . m Common class (extension point) (Cosmetic)
- 16:15, 8 May 2013 (diff | hist) . . (-2) . . Template:Extension point
- 16:14, 8 May 2013 (diff | hist) . . (+13) . . Template:Extension point
- 16:13, 8 May 2013 (diff | hist) . . (+18) . . Template:Extension point
- 16:12, 8 May 2013 (diff | hist) . . (+210) . . Template:Extension point
- 16:08, 8 May 2013 (diff | hist) . . (-95) . . Moved class (extension point) (Template used)
- 16:07, 8 May 2013 (diff | hist) . . (-99) . . Method (extension point)
- 16:07, 8 May 2013 (diff | hist) . . (+56) . . Template:Extension point
- 16:06, 8 May 2013 (diff | hist) . . (-101) . . Look and feel (extension point) (Template used) (top)
- 16:04, 8 May 2013 (diff | hist) . . (-108) . . Host object (extension point) (Template used)
- 16:04, 8 May 2013 (diff | hist) . . (-1) . . m Diagram view part (extension point) (Cosmetic)
- 16:03, 8 May 2013 (diff | hist) . . (-95) . . Export (extension point) (Template used)
- 16:02, 8 May 2013 (diff | hist) . . (-2) . . Template:Extension point
- 16:01, 8 May 2013 (diff | hist) . . (-90) . . Diagram view part (extension point) (Template used)
- 16:01, 8 May 2013 (diff | hist) . . (-94) . . Common class (extension point) (Template used)
- 16:00, 8 May 2013 (diff | hist) . . (+1) . . Template:Extension point
- 15:56, 8 May 2013 (diff | hist) . . (+51) . . Template:Extension point
- 15:51, 8 May 2013 (diff | hist) . . (+106) . . N Template:Extension point (Created page with "__NOTOC__ Category:Extension points ;Identifier :{{{2}}}.{{{1}}} ;Plugin :[[{{{2}}} (plugin)|{{{2}}}]]")
- 15:47, 8 May 2013 (diff | hist) . . (+1,601) . . N Look and feel (extension point) (Created page with "__NOTOC__ ;Identifier :ru.biosoft.workbench.lookAndFeel ;Plugin :ru.biosoft.workbench ;Since :0.7.6 ;Applicable for :BioUML workbench ==...")
- 15:39, 8 May 2013 (diff | hist) . . (+3) . . m BioUML development history (→2003 - 2007)
- 12:59, 8 May 2013 (diff | hist) . . (+1,356) . . N Common class (extension point) (Created page with "__NOTOC__ ;Identifier :ru.biosoft.access.commonClass ;Plugin :ru.biosoft.access ;Since :0.9.3 === Motivation === Client-side JavaScript code of...")
- 12:42, 8 May 2013 (diff | hist) . . (+26) . . Category:Plugins (+Category:Development)
- 12:40, 8 May 2013 (diff | hist) . . (+65) . . m BioUML development history (Links - →2012 - 2013)
- 12:29, 8 May 2013 (diff | hist) . . (+2,048) . . N Moved class (extension point) (Created page with "__NOTOC__ ;Identifier :ru.biosoft.access.movedClass ;Plugin :ru.biosoft.access ;Since :0.9.4 === Motivation === Sometimes it's desirable to ren...")
- 12:06, 8 May 2013 (diff | hist) . . (+30) . . BioUML user interface (+Repository pane toolbar)
- 12:06, 8 May 2013 (diff | hist) . . (+459) . . N Repository pane toolbar (Created page with "[[BioUML web edition interface. Repository pane toolbar is marked as (F).]] {{Stub}} '''Repository pane toolbar''' is the toolbar located a...")
- 11:10, 8 May 2013 (diff | hist) . . (+4) . . GeneXplain
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