Protected pages
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- Copy folder (analysis) (605 bytes) (fully protected) (Protection log)
- Export element (analysis) (725 bytes) (fully protected) (Protection log)
- Install TRANSFAC(R) database (analysis) (543 bytes) (fully protected) (Protection log)
- Install TRANSPATH(R) database (analysis) (675 bytes) (fully protected) (Protection log)
- Analysis of Cis-Regulatory Modules (analysis) (1,067 bytes) (fully protected) (Protection log)
- Annotate track with genes (analysis) (950 bytes) (fully protected) (Protection log)
- Bowtie (analysis) (2,127 bytes) (fully protected) (Protection log)
- ChIP-seq peak profile (analysis) (846 bytes) (fully protected) (Protection log)
- ChIPHorde (analysis) (1,739 bytes) (fully protected) (Protection log)
- ChIPMunk (analysis) (1,549 bytes) (fully protected) (Protection log)
- Change profile cutoffs (analysis) (827 bytes) (fully protected) (Protection log)
- Chromosome enrichment (analysis) (1,052 bytes) (fully protected) (Protection log)
- Compare site models (analysis) (953 bytes) (fully protected) (Protection log)
- Composite module to proteins (analysis) (1,886 bytes) (fully protected) (Protection log)
- Construct IPS CisModule (analysis) (805 bytes) (fully protected) (Protection log)
- Construct composite modules (analysis) (3,587 bytes) (fully protected) (Protection log)
- Construct composite modules on tracks (analysis) (3,705 bytes) (fully protected) (Protection log)
- Convert site models to proteins (analysis) (2,730 bytes) (fully protected) (Protection log)
- Convert table to track (analysis) (1,307 bytes) (fully protected) (Protection log)
- Create IPS model (analysis) (808 bytes) (fully protected) (Protection log)
- Create Match model (analysis) (946 bytes) (fully protected) (Protection log)
- Create profile from gene table (analysis) (867 bytes) (fully protected) (Protection log)
- Create weight matrix model (analysis) (938 bytes) (fully protected) (Protection log)
- Filter one track by another (analysis) (1,331 bytes) (fully protected) (Protection log)
- Filter track by condition (analysis) (1,204 bytes) (fully protected) (Protection log)
- Gene overlap statistics (analysis) (817 bytes) (fully protected) (Protection log)
- Gene set to track (analysis) (950 bytes) (fully protected) (Protection log)
- Genome coverage (analysis) (712 bytes) (fully protected) (Protection log)
- Heterozygous site caller (analysis) (805 bytes) (fully protected) (Protection log)
- IPS motif discovery (analysis) (1,078 bytes) (fully protected) (Protection log)
- Join tracks (analysis) (662 bytes) (fully protected) (Protection log)
- Merge track statistics (analysis) (738 bytes) (fully protected) (Protection log)
- Motif quality analysis (874 bytes) (fully protected) (Protection log)
- Mutation effect (analysis) (998 bytes) (fully protected) (Protection log)
- Preprocess raw reads (analysis) (3,793 bytes) (fully protected) (Protection log)
- Process track with sites (analysis) (1,465 bytes) (fully protected) (Protection log)
- Read counter (analysis) (801 bytes) (fully protected) (Protection log)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (2,027 bytes) (fully protected) (Protection log)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (2,882 bytes) (fully protected) (Protection log)
- SNP matching (analysis) (1,759 bytes) (fully protected) (Protection log)
- Site counts in repeats (analysis) (543 bytes) (fully protected) (Protection log)
- Site distribution (analysis) (762 bytes) (fully protected) (Protection log)
- Site search on gene set (analysis) (1,576 bytes) (fully protected) (Protection log)
- Site search on track (analysis) (843 bytes) (fully protected) (Protection log)
- Site search result optimization (analysis) (1,290 bytes) (fully protected) (Protection log)
- Site search summary (analysis) (820 bytes) (fully protected) (Protection log)
- Track coverage (analysis) (1,157 bytes) (fully protected) (Protection log)
- Track statistics (analysis) (2,541 bytes) (fully protected) (Protection log)
- Track to gene set (analysis) (1,032 bytes) (fully protected) (Protection log)
- Creasemarks analysis (897 bytes) (fully protected) (Protection log)
- Mass Conservation Analysis (1,773 bytes) (fully protected) (Protection log)
- Metabolic Control Analysis (1,702 bytes) (fully protected) (Protection log)
- Reactions Analysis (839 bytes) (fully protected) (Protection log)
- Sensitivity Analysis (1,754 bytes) (fully protected) (Protection log)
- Steady State (analysis) (3,278 bytes) (fully protected) (Protection log)
- Stoichiometric Matrix (analysis) (1,737 bytes) (fully protected) (Protection log)
- Create DAS track (analysis) (1,141 bytes) (fully protected) (Protection log)
- Agilent normalization (analysis) (2,369 bytes) (fully protected) (Protection log)
- Annotate table (analysis) (2,054 bytes) (fully protected) (Protection log)
- Apply state to diagram (analysis) (738 bytes) (fully protected) (Protection log)
- CRC Analysis (2,934 bytes) (fully protected) (Protection log)
- Cluster analysis by K-means (analysis) (2,362 bytes) (fully protected) (Protection log)
- Convert table (analysis) (3,874 bytes) (fully protected) (Protection log)
- Convert table via homology (analysis) (762 bytes) (fully protected) (Protection log)
- Create folder (analysis) (540 bytes) (fully protected) (Protection log)
- Enrichment analysis (4,822 bytes) (fully protected) (Protection log)
- Filter table (analysis) (2,763 bytes) (fully protected) (Protection log)
- Functional classification (analysis) (4,203 bytes) (fully protected) (Protection log)
- Illumina normalization (analysis) (1,215 bytes) (fully protected) (Protection log)
- Join several tables (analysis) (998 bytes) (fully protected) (Protection log)
- Join table (analysis) (1,969 bytes) (fully protected) (Protection log)
- PASS analysis (1,184 bytes) (fully protected) (Protection log)
- Select table columns (analysis) (685 bytes) (fully protected) (Protection log)
- Venn diagrams (analysis) (1,571 bytes) (fully protected) (Protection log)
- Compare Experiments (analysis) (614 bytes) (fully protected) (Protection log)
- Gene features (analysis) (811 bytes) (fully protected) (Protection log)
- Validate Experiments (analysis) (503 bytes) (fully protected) (Protection log)
- Linear Shifted Model (analysis) (1,268 bytes) (fully protected) (Protection log)
- Nonlinear Model (analysis) (1,175 bytes) (fully protected) (Protection log)
- SDE model (analysis) (857 bytes) (fully protected) (Protection log)
- BED format (3,167 bytes) (fully protected) (Protection log)
- BioUML format (776 bytes) (fully protected) (Protection log)
- Breakdancer output (file format) (3,075 bytes) (fully protected) (Protection log)
- CNVnator genotype output (file format) (982 bytes) (fully protected) (Protection log)
- CellML (file format) (2,778 bytes) (fully protected) (Protection log)
- EMBL format (4,584 bytes) (fully protected) (Protection log)
- Fasta format (2,520 bytes) (fully protected) (Protection log)
- Fastq format (453 bytes) (fully protected) (Protection log)
- GenBank format (11,373 bytes) (fully protected) (Protection log)
- Gene Transfer Format (6,224 bytes) (fully protected) (Protection log)
- General Feature Format (4,985 bytes) (fully protected) (Protection log)
- Generic file (520 bytes) (fully protected) (Protection log)
- GinSim (file format) (4,718 bytes) (fully protected) (Protection log)
- HTML file (364 bytes) (fully protected) (Protection log)
- Image file (404 bytes) (fully protected) (Protection log)
- Interval format (1,231 bytes) (fully protected) (Protection log)
- Pindel output (file format) (467 bytes) (fully protected) (Protection log)
- SAM or BAM alignment file (1,002 bytes) (fully protected) (Protection log)
- SBML (file format) (4,037 bytes) (fully protected) (Protection log)
- SBML(CellDesigner) (file format) (431 bytes) (fully protected) (Protection log)
- SDF file (2,226 bytes) (fully protected) (Protection log)
- SED-ML file (800 bytes) (fully protected) (Protection log)
- SIF (file format) (4,973 bytes) (fully protected) (Protection log)
- SISSRs output (file format) (913 bytes) (fully protected) (Protection log)
- TRANSFAC matrices format (541 bytes) (fully protected) (Protection log)
- TRANSFAC profile (file format) (605 bytes) (fully protected) (Protection log)
- Tabular (file format) (2,588 bytes) (fully protected) (Protection log)
- Text file (443 bytes) (fully protected) (Protection log)
- Text output file generated by R (file format) (411 bytes) (fully protected) (Protection log)
- Upload from FTP (analysis) (851 bytes) (fully protected) (Protection log)
- VAT output (file format) (313 bytes) (fully protected) (Protection log)
- VCF format (1,678 bytes) (fully protected) (Protection log)
- Varscan output (file format) (354 bytes) (fully protected) (Protection log)
- Wiggle format (7,073 bytes) (fully protected) (Protection log)
- ZIP-archive (file format) (887 bytes) (fully protected) (Protection log)
- Cluster by shortest path (analysis) (1,340 bytes) (fully protected) (Protection log)
- Effector search (analysis) (1,729 bytes) (fully protected) (Protection log)
- Extend network (analysis) (820 bytes) (fully protected) (Protection log)
- Join diagrams (analysis) (866 bytes) (fully protected) (Protection log)
- Map to Transpath (analysis) (644 bytes) (fully protected) (Protection log)
- Regulator search (analysis) (7,336 bytes) (fully protected) (Protection log)
- Save hits (analysis) (1,063 bytes) (fully protected) (Protection log)
- Save network (analysis) (971 bytes) (fully protected) (Protection log)
- Visualize results (analysis) (1,049 bytes) (fully protected) (Protection log)
- Cellular genetic algorithm (analysis) (2,184 bytes) (fully protected) (Protection log)
- Evolution strategy (SRES) (analysis) (3,357 bytes) (fully protected) (Protection log)
- GLBSOLVE (analysis) (1,887 bytes) (fully protected) (Protection log)
- Particle swarm optimization (analysis) (3,121 bytes) (fully protected) (Protection log)
- Quadratic Hill-climbing (analysis) (5,635 bytes) (fully protected) (Protection log)
- Simulation analysis (870 bytes) (fully protected) (Protection log)
- Correlation Analysis (2,428 bytes) (fully protected) (Protection log)
- Fold-Change calculation (analysis) (1,388 bytes) (fully protected) (Protection log)
- Hypergeometric analysis (5,783 bytes) (fully protected) (Protection log)
- Meta analysis (2,146 bytes) (fully protected) (Protection log)
- Polynomial Regression analysis (3,837 bytes) (fully protected) (Protection log)
- Up and Down Identification (analysis) (8,533 bytes) (fully protected) (Protection log)
- Category:Import (analyses group) (88 bytes) (fully protected) (Protection log)
- Category:Statistics (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:BSA (analyses group) (85 bytes) (fully protected) (Protection log)
- Category:Molecular networks (analyses group) (100 bytes) (fully protected) (Protection log)
- Category:Simulation (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:GTRD (analyses group) (86 bytes) (fully protected) (Protection log)
- Category:Admin (analyses group) (190 bytes) (fully protected) (Protection log)
- Category:Data (analyses group) (86 bytes) (fully protected) (Protection log)
- Category:GeneModels (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:Creasemarks (analyses group) (93 bytes) (fully protected) (Protection log)
- Category:DAS (analyses group) (85 bytes) (fully protected) (Protection log)
- Category:Optimization (analyses group) (94 bytes) (fully protected) (Protection log)
- Category:DAE models (analyses group) (92 bytes) (fully protected) (Protection log)
- MicroRNA aligner (analysis) (1,387 bytes) (fully protected) (Protection log)
- Building Flux Balance DataTable (analysis) (1,328 bytes) (fully protected) (Protection log)
- Flux Balance Constraint (analysis) (3,050 bytes) (fully protected) (Protection log)
- DiChIPMunk (analysis) (1,530 bytes) (fully protected) (Protection log)
- Category:ChIPMunk (analyses group) (90 bytes) (fully protected) (Protection log)
- DiChIPHorde (analysis) (1,721 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify and classify target genes (workflow) (1,597 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Agilent probes) (workflow) (2,212 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (2,236 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (1,990 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (2,062 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Illumina probes) (workflow) (2,214 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (1,993 bytes) (fully protected) (Protection log)
- Find common effectors in networks (GeneWays) (workflow) (1,248 bytes) (fully protected) (Protection log)
- Find master regulators in networks (GeneWays) (workflow) (1,390 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (1,723 bytes) (fully protected) (Protection log)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (1,735 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Agilent probes) (workflow) (1,575 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Illumina probes) (workflow) (1,728 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Gene table) (workflow) (1,311 bytes) (fully protected) (Protection log)
- Mapping to ontologies (Gene table) (workflow) (1,097 bytes) (fully protected) (Protection log)
- Mapping to ontologies for multiple gene sets (workflow) (1,366 bytes) (fully protected) (Protection log)
- Analyze promoters (GTRD) (workflow) (2,111 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (675 bytes) (fully protected) (Protection log)
- Analyze promoters (TRANSFAC(R)) (workflow) (2,074 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (712 bytes) (fully protected) (Protection log)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (3,087 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (779 bytes) (fully protected) (Protection log)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (1,799 bytes) (fully protected) (Protection log)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (1,343 bytes) (fully protected) (Protection log)
- Find common effectors in networks (TRANSPATH(R)) (workflow) (1,458 bytes) (fully protected) (Protection log)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (1,637 bytes) (fully protected) (Protection log)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (1,992 bytes) (fully protected) (Protection log)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (2,849 bytes) (fully protected) (Protection log)
- Category:ISB analyses (109 bytes) (fully protected) (Protection log)
- Category:Autosome.Ru analyses (92 bytes) (fully protected) (Protection log)
- Category:GeneXplain analyses (96 bytes) (fully protected) (Protection log)
- Category:GeneXplain workflows (98 bytes) (fully protected) (Protection log)
- GC island finder (analysis) (648 bytes) (fully protected) (Protection log)
- Biouml.plugins.agentmodeling (plugin) (210 bytes) (fully protected) (Protection log)
- Biouml.plugins.bionetgen (plugin) (366 bytes) (fully protected) (Protection log)
- Biouml.plugins.biopax (plugin) (345 bytes) (fully protected) (Protection log)
- Biouml.plugins.bkl (plugin) (682 bytes) (fully protected) (Protection log)
- Biouml.plugins.bowtie (plugin) (314 bytes) (fully protected) (Protection log)
- Biouml.plugins.cellml (plugin) (334 bytes) (fully protected) (Protection log)
- Biouml.plugins.chemoinformatics (plugin) (454 bytes) (fully protected) (Protection log)
- Biouml.plugins.chipmunk (plugin) (826 bytes) (fully protected) (Protection log)
- Biouml.plugins.chebi (plugin) (637 bytes) (fully protected) (Protection log)
- Biouml.plugins.cma (plugin) (1,533 bytes) (fully protected) (Protection log)
- Biouml.plugins.creasemarks (plugin) (327 bytes) (fully protected) (Protection log)
- Biouml.plugins.das (plugin) (510 bytes) (fully protected) (Protection log)
- Biouml.plugins.endonet (plugin) (692 bytes) (fully protected) (Protection log)
- Biouml.plugins.enrichment (plugin) (905 bytes) (fully protected) (Protection log)
- Biouml.plugins.ensembl (plugin) (3,071 bytes) (fully protected) (Protection log)
- Biouml.plugins.fbc (plugin) (731 bytes) (fully protected) (Protection log)
- Biouml.plugins.expression (plugin) (396 bytes) (fully protected) (Protection log)
- Biouml.plugins.genemodels (plugin) (524 bytes) (fully protected) (Protection log)
- Biouml.plugins.genenet (plugin) (195 bytes) (fully protected) (Protection log)
- Biouml.plugins.geneways (plugin) (197 bytes) (fully protected) (Protection log)
- Biouml.plugins.ginsim (plugin) (334 bytes) (fully protected) (Protection log)
- Biouml.plugins.gne (plugin) (187 bytes) (fully protected) (Protection log)
- Biouml.plugins.go (plugin) (352 bytes) (fully protected) (Protection log)
- Biouml.plugins.graphml (plugin) (202 bytes) (fully protected) (Protection log)
- Biouml.plugins.gtrd (plugin) (3,205 bytes) (fully protected) (Protection log)
- Biouml.plugins.gxl (plugin) (200 bytes) (fully protected) (Protection log)
- Biouml.plugins.hemodynamics (plugin) (351 bytes) (fully protected) (Protection log)
- Biouml.plugins.illumina (plugin) (768 bytes) (fully protected) (Protection log)
- Biouml.plugins.kegg (plugin) (428 bytes) (fully protected) (Protection log)
- Biouml.plugins.lucene (plugin) (362 bytes) (fully protected) (Protection log)
- Biouml.plugins.matlab (plugin) (190 bytes) (fully protected) (Protection log)
- Biouml.plugins.keynodes (plugin) (2,112 bytes) (fully protected) (Protection log)
- Biouml.plugins.microarray (plugin) (325 bytes) (fully protected) (Protection log)
- Biouml.plugins.miriam (plugin) (209 bytes) (fully protected) (Protection log)
- Biouml.plugins.modelreduction (plugin) (1,270 bytes) (fully protected) (Protection log)
- Biouml.plugins.obo (plugin) (194 bytes) (fully protected) (Protection log)
- Biouml.plugins.optimization (plugin) (896 bytes) (fully protected) (Protection log)
- Biouml.plugins.pass (plugin) (305 bytes) (fully protected) (Protection log)
- Biouml.plugins.psimi (plugin) (188 bytes) (fully protected) (Protection log)
- Biouml.plugins.proteinmodel (plugin) (198 bytes) (fully protected) (Protection log)
- Biouml.plugins.reactome.biohub (plugin) (211 bytes) (fully protected) (Protection log)
- Biouml.plugins.reactome (plugin) (620 bytes) (fully protected) (Protection log)
- Biouml.plugins.research (plugin) (422 bytes) (fully protected) (Protection log)
- Biouml.plugins.sabiork (plugin) (184 bytes) (fully protected) (Protection log)
- Biouml.plugins.sbgn (plugin) (340 bytes) (fully protected) (Protection log)
- Biouml.plugins.sbml (plugin) (707 bytes) (fully protected) (Protection log)
- Biouml.plugins.sbw (plugin) (328 bytes) (fully protected) (Protection log)
- Biouml.plugins.server (plugin) (357 bytes) (fully protected) (Protection log)
- Biouml.plugins.sedml (plugin) (866 bytes) (fully protected) (Protection log)
- Biouml.plugins.simulation (plugin) (531 bytes) (fully protected) (Protection log)
- Biouml.plugins.softberry (plugin) (282 bytes) (fully protected) (Protection log)
- Biouml.plugins.stochastic (plugin) (208 bytes) (fully protected) (Protection log)
- Biouml.plugins.svg (plugin) (200 bytes) (fully protected) (Protection log)
- Biouml.plugins.test (plugin) (189 bytes) (fully protected) (Protection log)
- Biouml.plugins.transfac (plugin) (716 bytes) (fully protected) (Protection log)
- Biouml.plugins.transpath (plugin) (1,417 bytes) (fully protected) (Protection log)
- Biouml.plugins.uniprot (plugin) (191 bytes) (fully protected) (Protection log)
- Biouml.plugins.wiki (plugin) (196 bytes) (fully protected) (Protection log)
- Biouml.plugins.users (plugin) (204 bytes) (fully protected) (Protection log)
- Biouml.workbench.graph (plugin) (199 bytes) (fully protected) (Protection log)
- Biouml.workbench (plugin) (1,626 bytes) (fully protected) (Protection log)
- Com.developmentontheedge.server (plugin) (208 bytes) (fully protected) (Protection log)