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- Reactions Analysis (14 revisions)
- Annotate track with genes (analysis) (14 revisions)
- Validate Experiments (analysis) (14 revisions)
- Agilent normalization (analysis) (14 revisions)
- Create DAS track (analysis) (14 revisions)
- Merge track statistics (analysis) (14 revisions)
- Compare Experiments (analysis) (14 revisions)
- BioNetGen (14 revisions)
- Biouml.plugins.transpath (plugin) (14 revisions)
- Gene set to track (analysis) (14 revisions)
- Biouml.plugins.creasemarks (plugin) (14 revisions)
- Create IPS model (analysis) (14 revisions)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (14 revisions)
- Change profile cutoffs (analysis) (14 revisions)
- Site counts in repeats (analysis) (14 revisions)
- Building Flux Balance DataTable (analysis) (14 revisions)
- Compare site models (analysis) (14 revisions)
- Track coverage (analysis) (14 revisions)
- PASS analysis (14 revisions)
- Process track with sites (analysis) (14 revisions)
- Ru.biosoft.table (plugin) (13 revisions)
- Create folder (analysis) (13 revisions)
- Biouml.plugins.enrichment (plugin) (13 revisions)
- Genome Browser json (13 revisions)
- Create weight matrix model (analysis) (13 revisions)
- Biouml.plugins.chemoinformatics (plugin) (13 revisions)
- Bowtie (analysis) (13 revisions)
- Construct IPS CisModule (analysis) (13 revisions)
- Annotate table (analysis) (13 revisions)
- Ru.biosoft.workbench (plugin) (13 revisions)
- Systems biology - manual model construction (13 revisions)
- CRC Analysis (13 revisions)
- Illumina normalization (analysis) (13 revisions)
- Biouml.plugins.transfac (plugin) (13 revisions)
- Biouml.plugins.cma (plugin) (13 revisions)
- Site search result optimization (analysis) (13 revisions)
- Select table columns (analysis) (13 revisions)
- Biouml.plugins.bindingregions (plugin) (13 revisions)
- Genome coverage (analysis) (13 revisions)
- Correlation Analysis (13 revisions)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (13 revisions)
- Site search summary (analysis) (13 revisions)
- Create profile from gene table (analysis) (13 revisions)
- Motif quality analysis (13 revisions)
- Create Match model (analysis) (13 revisions)
- Convert site models to proteins (analysis) (13 revisions)
- Adaptive simulated annealing (analysis) (13 revisions)
- Join several tables (analysis) (13 revisions)
- Biouml.plugins.bkl (plugin) (13 revisions)
- Biouml.plugins.modelreduction (plugin) (13 revisions)
- Add expression values (analysis) (13 revisions)
- IPS motif discovery (analysis) (13 revisions)
- Join tracks (analysis) (13 revisions)
- Biouml.plugins.endonet (plugin) (12 revisions)
- Biouml.plugins.cellml (plugin) (12 revisions)
- Biouml.plugins.pass (plugin) (12 revisions)
- Biouml.plugins.go (plugin) (12 revisions)
- Biouml.plugins.sbml (plugin) (12 revisions)
- Manual parameter fitting (12 revisions)
- GTRD Workflow (12 revisions)
- Fastq mcf (12 revisions)
- Biouml.plugins.bionetgen (plugin) (12 revisions)
- Upload from FTP (analysis) (12 revisions)
- Biouml.plugins.das (plugin) (12 revisions)
- Ru.biosoft.server (plugin) (12 revisions)
- Biouml.plugins.reactome (plugin) (12 revisions)
- GeneNet (12 revisions)
- Join table (analysis) (12 revisions)
- Biouml.plugins.bowtie (plugin) (12 revisions)
- Biouml.plugins.simulation (plugin) (12 revisions)
- Biouml.plugins.keynodes (plugin) (12 revisions)
- Information box (11 revisions)
- Fold-Change calculation (analysis) (11 revisions)
- Creating Galaxy tool (11 revisions)
- Galaxy installation (11 revisions)
- Biouml.plugins.fbc (plugin) (11 revisions)
- Hadoop (11 revisions)
- Biouml.plugins.genemodels (plugin) (11 revisions)
- Map to Transpath (analysis) (11 revisions)
- Tutorials (11 revisions)
- ChIP-seq Analysis (11 revisions)
- Cellular genetic algorithm (analysis) (10 revisions)
- Evolution strategy (SRES) (analysis) (10 revisions)
- Biouml.plugins.softberry (plugin) (10 revisions)
- GLBSOLVE (analysis) (10 revisions)
- Analyze promoters (GTRD) (workflow) (10 revisions)
- Biouml.plugins.optimization (plugin) (10 revisions)
- BioUML team (10 revisions)
- Ru.biosoft.analysis.optimization (plugin) (10 revisions)
- Quadratic Hill-climbing (analysis) (10 revisions)
- Polynomial Regression analysis (10 revisions)
- Up and Down Identification (analysis) (10 revisions)
- Ru.biosoft.plugins.javascript (plugin) (10 revisions)
- Biouml.plugins.expression (plugin) (10 revisions)
- Presentations (10 revisions)
- Biouml.plugins.microarray (plugin) (10 revisions)
- Ensembl installation (10 revisions)
- Particle swarm optimization (analysis) (10 revisions)
- Hypergeometric analysis (10 revisions)
- Biouml.plugins.sedml (plugin) (10 revisions)
- Meta analysis (10 revisions)
- Join diagrams (analysis) (10 revisions)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (10 revisions)
- Ru.biosoft.galaxy (plugin) (10 revisions)
- Biouml.plugins.illumina (plugin) (10 revisions)
- Extend network (analysis) (10 revisions)
- Biouml.plugins.kegg (plugin) (10 revisions)
- Biouml.plugins.ginsim (plugin) (10 revisions)
- Gene set enrichment analysis (Illumina probes) (workflow) (10 revisions)
- MGL (9 revisions)
- Ru.biosoft.templates (plugin) (9 revisions)
- Create matrix by mixture of normal components (analysis) (9 revisions)
- Ru.biosoft.math (plugin) (9 revisions)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (9 revisions)
- Biouml.plugins.sabiork (plugin) (9 revisions)
- R installation (9 revisions)
- SBGN extension (9 revisions)
- Biouml.plugins.expasy (plugin) (9 revisions)
- Host object (extension point) (9 revisions)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (9 revisions)
- Ru.biosoft.plugins.jri (plugin) (9 revisions)
- Biouml.plugins.sbw (plugin) (9 revisions)
- BioUML exceptions (9 revisions)
- Diagram (element type) (9 revisions)
- Mapping to ontologies for multiple gene sets (workflow) (9 revisions)
- CWL (9 revisions)
- Steady State Examples (9 revisions)
- Analysis method development (9 revisions)
- Databases (9 revisions)
- Ru.biosoft.graph (plugin) (9 revisions)
- Method (extension point) (9 revisions)
- Biomodels (9 revisions)
- Biouml.plugins.obo (plugin) (8 revisions)
- Ru.biosoft.access.search (plugin) (8 revisions)
- Com.developmentontheedge.server (plugin) (8 revisions)
- Biouml.plugins.lucene (plugin) (8 revisions)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (8 revisions)
- Hierarchical layout (8 revisions)
- Com.developmentontheedge.util (plugin) (8 revisions)
- Defines.js (8 revisions)
- Biouml.plugins.gne (plugin) (8 revisions)
- Biouml.plugins.stochastic (plugin) (8 revisions)
- Analyze promoters (TRANSFAC(R)) (workflow) (8 revisions)
- Biouml.plugins.chebi (plugin) (8 revisions)
- Diagram view part (extension point) (8 revisions)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (8 revisions)
- Ru.biosoft.treetable (plugin) (8 revisions)
- Biouml.plugins.agentmodeling (plugin) (8 revisions)
- Descrete events (8 revisions)
- Transplorer (8 revisions)
- Biouml.plugins.svg (plugin) (8 revisions)
- Biouml.plugins.matlab (plugin) (8 revisions)
- Ensembl (8 revisions)
- Biouml.plugins.sbgn (plugin) (8 revisions)
- Rbiouml (8 revisions)
- Biouml.plugins.test (plugin) (8 revisions)
- Biouml.plugins.graphml (plugin) (8 revisions)
- ChIP-Seq - Identify and classify target genes (workflow) (8 revisions)
- Ru.biosoft.works (plugin) (8 revisions)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (8 revisions)
- Compute differentially expressed genes (Agilent probes) (workflow) (8 revisions)
- Biouml.plugins.proteinmodel (plugin) (8 revisions)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (8 revisions)
- Transcripts - Ensembl (8 revisions)
- Table document (8 revisions)
- Biouml.plugins.gxl (plugin) (8 revisions)
- Biouml.plugins.miriam (plugin) (8 revisions)
- Biouml.plugins.uniprot (plugin) (8 revisions)
- Ru.biosoft.server.servlets (plugin) (8 revisions)
- Mixture of normal components (analysis) (8 revisions)
- Compute differentially expressed genes (Illumina probes) (workflow) (8 revisions)
- BioUML format (8 revisions)
- Cross cost grid layout (8 revisions)
- Biouml.plugins.psimi (plugin) (8 revisions)
- Biouml.plugins.genenet (plugin) (8 revisions)
- Biouml.plugins.biopax (plugin) (8 revisions)
- Biouml.plugins.hemodynamics (plugin) (8 revisions)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (8 revisions)
- Biouml.plugins.users (plugin) (8 revisions)
- Ru.biosoft.server.tomcat (plugin) (8 revisions)
- Biouml.plugins.reactome.biohub (plugin) (8 revisions)
- Biouml.plugins.geneways (plugin) (8 revisions)
- Proteins - Ensembl (8 revisions)
- Biouml.plugins.server (plugin) (8 revisions)
- New BioStore (8 revisions)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (8 revisions)
- Biouml.plugins.wiki (plugin) (8 revisions)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (8 revisions)
- Biouml.plugins.simulation-test (plugin) (8 revisions)
- Biouml.workbench.graph (plugin) (8 revisions)
- Ru.biosoft.services (plugin) (8 revisions)
- Biouml.plugins.research (plugin) (8 revisions)
- GC island finder (analysis) (8 revisions)
- SIF (file format) (8 revisions)
- Find master regulators in networks (GeneWays) (workflow) (7 revisions)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (7 revisions)
- ROC curves for best sites union (analysis) (7 revisions)
- CNVnator genotype output (file format) (7 revisions)
- Binding regions summary (analysis) (7 revisions)
- TRANSFAC matrices format (7 revisions)
- Proteins - IPI (7 revisions)
- Proteins - UniProt (7 revisions)
- SISSRs output (file format) (7 revisions)
- Graph search (7 revisions)
- TRANSFAC profile (file format) (7 revisions)
- Genome Browser iframe (7 revisions)
- Quasi-steady-state analysis example (7 revisions)
- Export (extension point) (7 revisions)
- Fasta format (7 revisions)
- Danon et al. Covid-19 transmission in England (7 revisions)
- SBML(CellDesigner) (file format) (7 revisions)
- Proteins - Reactome (7 revisions)
- Normalize (host object) (7 revisions)
- Perspective (7 revisions)
- Breakdancer output (file format) (7 revisions)
- Locations of best sites (analysis) (7 revisions)
- Galaxy cloud (7 revisions)
- Genes - Ensembl (7 revisions)
- SBML (file format) (7 revisions)
- Common class (extension point) (7 revisions)
- Biouml.plugins.antimony (plugin) (7 revisions)
- Disease - MeSH (7 revisions)
- EMBL format (7 revisions)
- Genes - Entrez (7 revisions)
- Force directed layout (7 revisions)
- Image (element type) (7 revisions)
- Repository pane toolbar (7 revisions)
- Genes - GenBank (7 revisions)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (7 revisions)
- Correlations of best sites (analysis) (7 revisions)
- ChIP-Seq characteristics distribution (analysis) (7 revisions)
- SED-ML file (7 revisions)
- Expression mapping (7 revisions)
- CellML (file format) (7 revisions)
- Lucene indexes creation (7 revisions)
- BED format (7 revisions)
- Overall circulation model (7 revisions)
- GenBank format (7 revisions)
- Gene set enrichment analysis (Agilent probes) (workflow) (7 revisions)
- GinSim (file format) (7 revisions)
- C-tau (7 revisions)
- IPS ROC-curves (analysis) (7 revisions)
- Gene set enrichment analysis (Gene table) (workflow) (7 revisions)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (7 revisions)
- SAM or BAM alignment file (7 revisions)
- Find common effectors in networks (GeneWays) (workflow) (7 revisions)
- Mapping to ontologies (Gene table) (workflow) (7 revisions)
- Extract ribosomal RNA (analysis) (6 revisions)
- CloudMan (6 revisions)
- GeneXplain GmbH (6 revisions)
