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- Probes - Illumina (14:33, 15 May 2013)
- Genes - Gene symbol (14:33, 15 May 2013)
- Genes - Entrez (14:33, 15 May 2013)
- Transcripts - RefSeq (14:33, 15 May 2013)
- Html (element type) (11:04, 16 May 2013)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- Find common effectors in networks (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (13:28, 16 May 2013)
- R (host object) (14:57, 16 May 2013)
- Das (host object) (14:57, 16 May 2013)
- Cdk (host object) (14:57, 16 May 2013)
- Chipmunk (host object) (14:57, 16 May 2013)
- Ensembl (host object) (14:57, 16 May 2013)
- Galaxy (host object) (14:57, 16 May 2013)
- Microarray (host object) (14:57, 16 May 2013)
- ModelReduction (host object) (14:57, 16 May 2013)
- Network (host object) (14:57, 16 May 2013)
- Optimization (host object) (14:57, 16 May 2013)
- Sbml (host object) (14:57, 16 May 2013)
- Sbw (host object) (14:57, 16 May 2013)
- SimulationEngine (host object) (14:57, 16 May 2013)
- Table (host object) (14:57, 16 May 2013)
- Host object (extension point) (15:12, 16 May 2013)
- Default (perspective) (15:46, 16 May 2013)
- ChIPMunk (perspective) (15:47, 16 May 2013)
- GTRD (perspective) (15:47, 16 May 2013)
- Softberry (perspective) (15:47, 16 May 2013)
- Softberry, Inc. (16:01, 16 May 2013)
- Autosome.Ru (17:10, 16 May 2013)
- Peaks to matrices (workflow) (17:23, 16 May 2013)
- Reads to matrices (workflow) (17:23, 16 May 2013)
- Analysis (element type) (18:04, 16 May 2013)
- Galaxy method (element type) (16:30, 17 May 2013)
- File (element type) (16:31, 17 May 2013)
- BED format (16:39, 17 May 2013)
- CNVnator genotype output (file format) (16:39, 17 May 2013)
- Breakdancer output (file format) (16:39, 17 May 2013)
- Gene Transfer Format (16:39, 17 May 2013)
- General Feature Format (16:40, 17 May 2013)
- HTML file (16:40, 17 May 2013)
- Image file (16:40, 17 May 2013)
- Interval format (16:40, 17 May 2013)
- Pindel output (file format) (16:40, 17 May 2013)
- Tabular (file format) (16:40, 17 May 2013)
- Text file (16:40, 17 May 2013)
- Text output file generated by R (file format) (16:40, 17 May 2013)
- VAT output (file format) (16:40, 17 May 2013)
- Varscan output (file format) (16:40, 17 May 2013)
- VCF format (16:40, 17 May 2013)
- ZIP-archive (file format) (16:40, 17 May 2013)
- Wiggle format (16:40, 17 May 2013)
- Matrix library (element type) (16:52, 17 May 2013)
- Matrix (element type) (17:04, 17 May 2013)
- Site model (element type) (17:15, 17 May 2013)
- Profile (element type) (17:23, 17 May 2013)
- Biohub (extension point) (11:17, 20 May 2013)
- BioHub (11:18, 20 May 2013)
- Method description HTML file (10:51, 28 May 2013)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (13:34, 30 May 2013)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (13:34, 30 May 2013)
- Folder (element type) (17:40, 30 May 2013)
- Join table (analysis) (11:14, 31 May 2013)
- Extend network (analysis) (11:15, 31 May 2013)
- Map to Transpath (analysis) (11:15, 31 May 2013)
- Join diagrams (analysis) (11:15, 31 May 2013)
- Cellular genetic algorithm (analysis) (11:15, 31 May 2013)
- Evolution strategy (SRES) (analysis) (11:15, 31 May 2013)
- GLBSOLVE (analysis) (11:15, 31 May 2013)
- Particle swarm optimization (analysis) (11:15, 31 May 2013)
- Quadratic Hill-climbing (analysis) (11:15, 31 May 2013)
- Correlation Analysis (11:15, 31 May 2013)
- Hypergeometric analysis (11:15, 31 May 2013)
- Meta analysis (11:15, 31 May 2013)
- Polynomial Regression analysis (11:15, 31 May 2013)
- Up and Down Identification (analysis) (11:15, 31 May 2013)
- Types (extension point) (16:02, 3 June 2013)
- Analyses (extension point) (16:24, 3 June 2013)
- Site models - GTRD (14:40, 4 June 2013)
- Hormone - EndoNet (14:40, 4 June 2013)
- Unspecified (reference type) (14:40, 4 June 2013)
- Cell - EndoNet (14:40, 4 June 2013)
- ChIP-seq peaks - GTRD (14:40, 4 June 2013)
- Proteins - PDB (14:40, 4 June 2013)
- Structures - PDB (14:40, 4 June 2013)
- Isoforms - GTRD (14:40, 4 June 2013)
- Disease - MeSH (14:40, 4 June 2013)
- Perspective (15:47, 4 June 2013)
- General control panel (15:57, 4 June 2013)
- Viewpart (15:57, 4 June 2013)
- SAM or BAM alignment file (17:17, 6 June 2013)
- SISSRs output (file format) (17:17, 6 June 2013)
- Reference type (17:40, 6 June 2013)
- Modular modeling (16:16, 7 June 2013)
- Databases installation (18:05, 11 June 2013)
- Layout (extension point) (15:37, 14 June 2013)
- Research diagram (15:42, 14 June 2013)
- Force directed layout (15:57, 14 June 2013)
- Adaptive simulated annealing (analysis) (16:16, 14 June 2013)
- Install TRANSFAC(R) database (analysis) (18:06, 14 June 2013)
- Genome coverage (analysis) (18:06, 14 June 2013)
- Track coverage (analysis) (18:07, 14 June 2013)
- Create DAS track (analysis) (18:07, 14 June 2013)
- IPS-scores in SNPs (analysis) (13:38, 17 June 2013)
- SNP regions in genome (analysis) (13:38, 17 June 2013)
- About dialog (extension point) (15:02, 17 June 2013)
- Function (extension point) (15:13, 17 June 2013)
- Module type (extension point) (15:29, 17 June 2013)
- Repository pane toolbar (15:34, 17 June 2013)
- Element action (extension point) (15:47, 17 June 2013)
- Repository actions provider (extension point) (16:18, 17 June 2013)
- BioUML user interface (13:09, 19 June 2013)
- Repository (14:40, 19 June 2013)
- Information box (14:49, 19 June 2013)
- Table (element type) (14:57, 19 June 2013)
- Element type (15:12, 19 June 2013)
- Graph search (15:16, 19 June 2013)
- TRRD (16:37, 19 June 2013)
- Transplorer (16:38, 19 June 2013)
- GeneNet (16:38, 19 June 2013)
- Search tools (12:02, 24 June 2013)
- Features (14:53, 25 June 2013)
- Reactome (15:24, 26 June 2013)
- Geneways (15:26, 26 June 2013)
- Table document (16:06, 26 June 2013)
- Sequence (element type) (12:27, 27 June 2013)
- Ensembl (13:15, 27 June 2013)
- Track (element type) (13:29, 27 June 2013)
- Biopath (15:13, 27 June 2013)
- Biomodels (15:14, 27 June 2013)
- Repository pane (15:20, 27 June 2013)
- Genome browser (11:34, 1 July 2013)
- Modular model of the human CVS v.1 (11:37, 1 July 2013)
- Long-term model of the CVS/Renal system (11:37, 1 July 2013)
- Overall circulation model (11:39, 1 July 2013)
- Modular model of the human CVS v.2 (11:40, 1 July 2013)
- 1-dimensional arterial tree model (11:42, 1 July 2013)
- Import (extension point) (12:10, 1 July 2013)
- Gene Ontology (12:27, 1 July 2013)
- Databases (11:13, 2 July 2013)
- Tree-table (element type) (13:30, 2 July 2013)
- Grid layout (13:38, 2 July 2013)
- Orthogonal layout (13:38, 2 July 2013)
- Hierarchical layout (13:39, 2 July 2013)
- Cross cost grid layout (13:39, 2 July 2013)
- MGL (13:42, 2 July 2013)
- Document pane (14:22, 2 July 2013)
- Proteins - GenBank (17:58, 2 July 2013)
- ChIP experiment - GTRD (17:59, 2 July 2013)
- Proteins - NCBI (17:59, 2 July 2013)
- Categories - Gene ontology (18:06, 2 July 2013)
- Categories - ExPASy (18:06, 2 July 2013)
- Pathways (reference type) (18:06, 2 July 2013)
- Pathways - Transpath (18:06, 2 July 2013)
- Categories - GTRD (18:06, 2 July 2013)
- Categories (reference type) (18:06, 2 July 2013)
- Pathways - Reactome (18:06, 2 July 2013)
- Matching BioHub (15:57, 3 July 2013)
- Classification hub (16:13, 3 July 2013)
- Tree-table document (16:46, 3 July 2013)
- Enzymes - KEGG (18:11, 9 July 2013)
- GO installation (16:45, 15 July 2013)
- Enzymes - ExPASy (18:37, 16 July 2013)
- Clean up SQL database (analysis) (18:38, 16 July 2013)
- Galaxy installation (11:31, 30 July 2013)
- Hash parameters (10:42, 2 August 2013)
- Server administrator (11:00, 19 August 2013)
- BioUML server (11:02, 19 August 2013)
- Product (11:04, 19 August 2013)
- Document factory (extension point) (13:35, 26 August 2013)
- Common class (extension point) (10:17, 28 August 2013)
- Plugin development (11:35, 10 September 2013)
- BioUML exceptions (12:24, 11 September 2013)
- Using R in BioUML (17:00, 12 September 2013)
- Visual modeling (17:36, 12 September 2013)
- Method (extension point) (12:19, 13 September 2013)
- BioUML web client (14:01, 13 September 2013)
- Analysis method development (14:06, 13 September 2013)
- Script type (extension point) (14:32, 13 September 2013)
- Query system (extension point) (14:38, 13 September 2013)
- Data collection listener (extension point) (14:42, 13 September 2013)
- Diff manager (extension point) (14:47, 13 September 2013)
- Application log (viewpart) (14:51, 13 September 2013)
- Script viewpart (14:52, 13 September 2013)
- Rbiouml (12:30, 19 September 2013)
- Diagram (element type) (14:17, 8 October 2013)
- Diagram document (16:44, 8 October 2013)
- BioUML (16:43, 9 October 2013)
- to user communication (11:57, 10 October 2013)
- Diagram editing history (15:10, 11 October 2013)
- Project (15:43, 11 October 2013)
- Collaborative diagram editing (14:21, 14 October 2013)
- Hadoop (11:16, 17 November 2013)
- NGS misc (11:19, 17 November 2013)
- KEGG (reference type) (14:27, 18 November 2013)
- Perfectosape (host object) (15:00, 18 November 2013)
- Perspective (extension point) (15:19, 21 November 2013)
- Wizard page (extension point) (15:21, 21 November 2013)
- Workflow (16:54, 3 December 2013)
- CloudMan (20:52, 5 January 2014)
- BioCloudCentral (21:13, 5 January 2014)
- CloudBioLinux (21:53, 5 January 2014)
- BioBlend (21:57, 5 January 2014)
- Galaxy cloud (21:02, 9 January 2014)
- EMBL format (11:20, 13 January 2014)
- Fasta format (11:20, 13 January 2014)
- GenBank format (11:20, 13 January 2014)
- Biohub (host object) (11:20, 13 January 2014)
- DataFilter (host object) (11:20, 13 January 2014)
- Report (host object) (11:20, 13 January 2014)
- Node (host object) (11:20, 13 January 2014)
- PharmML (23:56, 11 February 2014)
- DDMoRe consortium (00:04, 12 February 2014)
- Defines.js (18:23, 5 March 2014)
- Non-Linear Mixed Effects Model (21:35, 14 April 2014)
- Система кровообращения человека (18:19, 30 May 2014)
- N-Glycan biosynthesis (15:21, 6 June 2014)
- Virtual biology (23:07, 21 September 2014)
- Diagram view part (extension point) (17:04, 25 September 2014)
- Virtual rat (23:40, 6 October 2014)
- Glycan structures (12:48, 13 October 2014)
- BioUML web edition (14:12, 1 December 2014)
- Transformer (extension point) (16:04, 11 December 2014)
- Probes - Affymetrix ST (16:15, 11 December 2014)
- Probes - Affymetrix HG-U133+ PM (16:15, 11 December 2014)
- Probes - Agilent Tox Array (16:15, 11 December 2014)
- SNPs in binding regions (analysis) (16:17, 11 December 2014)
- Creasemarks analysis (16:17, 11 December 2014)
- Ftp (host object) (16:18, 11 December 2014)
- SiteAnalysis (host object) (16:18, 11 December 2014)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Analyze any DNA sequence (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (16:19, 11 December 2014)
- Probes - Affymetrix HuGene-2-0-st (16:32, 11 December 2014)
- Probes - Affymetrix HuGene-2-1-st (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-2-0 (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-3-0 (16:32, 11 December 2014)
- Probes - Affymetrix RaGene-2-0-st (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-4-0 (16:32, 11 December 2014)
- MiRNA - miRBase (16:32, 11 December 2014)
- Lucene indexes creation (16:47, 11 December 2014)
- Virtual physiological human (01:56, 9 January 2015)
- BioGears (06:25, 10 January 2015)
- HumanSim (06:50, 10 January 2015)
- Acknowledgements (13:31, 19 March 2015)
- KeyNodes hub (16:28, 22 May 2015)
- R installation (16:21, 4 June 2015)
