Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
| Line 6: | Line 6: | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.5 |
=== Analysis methods === | === Analysis methods === | ||
Revision as of 11:49, 30 July 2013
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.5
Analysis methods
Analysis methods defined in this plugin:
Analysis of Cis-Regulatory Modules
- Binding regions summary
- ChIP-Seq characteristics distribution
- Cis-module identification
- Common and IPS scores correlation
- Correlations of best sites
- Count olig frequencies
- Create matrix by mixture of normal components
- Create matrix by mixture of normal components (ChIP-seq)
- Distinct TF classes
- Gathering genome statistics
- IPS ROC-curves
- IPS prediction
- IPS-scores in SNPs
- Identical best site ROC curves
- Locations of best sites
- Merge binding regions for cell-lines
- Mixture of normal components
- Non-merged ChIP-Seq tracks summary
- ROC curves for best sites union
- ROC curves in grouped peaks
- SNP regions in genome
- SNPs in binding regions
