Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
Line 11: | Line 11: | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
*[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | *[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | ||
− | |||
*[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | *[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | ||
*[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]] | *[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]] | ||
Line 25: | Line 24: | ||
*[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]] | *[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]] | ||
*[[File:Default-analysis-icon.png]] [[IPS-scores in SNPs (analysis)|IPS-scores in SNPs]] | *[[File:Default-analysis-icon.png]] [[IPS-scores in SNPs (analysis)|IPS-scores in SNPs]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Identical best site ROC curves (analysis)|Identical best site ROC curves]] | ||
*[[File:Default-analysis-icon.png]] [[Locations of best sites (analysis)|Locations of best sites]] | *[[File:Default-analysis-icon.png]] [[Locations of best sites (analysis)|Locations of best sites]] | ||
*[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]] | *[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]] | ||
Line 30: | Line 30: | ||
*[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | *[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | ||
*[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | *[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | ||
+ | *[[File:Default-analysis-icon.png]] [[ROC curves in grouped peaks (analysis)|ROC curves in grouped peaks]] | ||
*[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | *[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | ||
*[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] | *[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] |
Revision as of 18:41, 16 July 2013
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.4
Analysis methods
Analysis methods defined in this plugin:
Analysis of Cis-Regulatory Modules
Binding regions summary
ChIP-Seq characteristics distribution
Cis-module identification
Common and IPS scores correlation
Correlations of best sites
Count olig frequencies
Create matrix by mixture of normal components
Create matrix by mixture of normal components (ChIP-seq)
Distinct TF classes
Gathering genome statistics
IPS ROC-curves
IPS prediction
IPS-scores in SNPs
Identical best site ROC curves
Locations of best sites
Merge binding regions for cell-lines
Mixture of normal components
Non-merged ChIP-Seq tracks summary
ROC curves for best sites union
ROC curves in grouped peaks
SNP regions in genome
SNPs in binding regions