Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
From BioUML platform
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;Version | ;Version | ||
:0.9.6 | :0.9.6 | ||
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| + | === Extension points === | ||
| + | Extension points defined in this plugin: | ||
| + | *[[Site model factory (extension point)|biouml.plugins.bindingregions.siteModelFactory]] | ||
=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
| + | *[[File:Default-analysis-icon.png]] [[Analysis of Binding Regions (analysis)|Analysis of Binding Regions]] | ||
*[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | *[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | ||
*[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | *[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | ||
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*[[File:Default-analysis-icon.png]] [[Mixture of normal components (analysis)|Mixture of normal components]] | *[[File:Default-analysis-icon.png]] [[Mixture of normal components (analysis)|Mixture of normal components]] | ||
*[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | *[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Peak finders comparison (analysis)|Peak finders comparison]] | ||
*[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | *[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | ||
*[[File:Default-analysis-icon.png]] [[ROC curves in grouped peaks (analysis)|ROC curves in grouped peaks]] | *[[File:Default-analysis-icon.png]] [[ROC curves in grouped peaks (analysis)|ROC curves in grouped peaks]] | ||
*[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | *[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | ||
*[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] | *[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Summary on AUCs (analysis)|Summary on AUCs]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:ISB plugins]] | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 11:21, 13 January 2014
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.6
Extension points
Extension points defined in this plugin:
Analysis methods
Analysis methods defined in this plugin:
Analysis of Binding Regions
- Analysis of Cis-Regulatory Modules
- Binding regions summary
- ChIP-Seq characteristics distribution
- Cis-module identification
- Common and IPS scores correlation
- Correlations of best sites
- Count olig frequencies
- Create matrix by mixture of normal components
- Create matrix by mixture of normal components (ChIP-seq)
- Distinct TF classes
- Gathering genome statistics
- IPS ROC-curves
- IPS prediction
- IPS-scores in SNPs
- Identical best site ROC curves
- Locations of best sites
- Merge binding regions for cell-lines
- Mixture of normal components
- Non-merged ChIP-Seq tracks summary
- Peak finders comparison
- ROC curves for best sites union
- ROC curves in grouped peaks
- SNP regions in genome
- SNPs in binding regions
- Summary on AUCs
