Pages with the most categories
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- Biouml.plugins.endonet (plugin) (3 categories)
- Biouml.plugins.geneways (plugin) (3 categories)
- Biouml.plugins.gtrd (plugin) (3 categories)
- Biouml.plugins.matlab (plugin) (3 categories)
- Ru.biosoft.fs (plugin) (3 categories)
- Biouml.plugins.obo (plugin) (3 categories)
- Ru.biosoft.plugins.jri (plugin) (3 categories)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.reactome (plugin) (3 categories)
- Ru.biosoft.vm (plugin) (3 categories)
- Biouml.plugins.sedml (plugin) (3 categories)
- Find gene fusions from RNA-seq (workflow) (3 categories)
- Biouml.plugins.test (plugin) (3 categories)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (3 categories)
- Find master regulators in networks (GeneWays) (workflow) (3 categories)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) (3 categories)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (3 categories)
- Compute differentially expressed genes using Limma (workflow) (3 categories)
- Analyze SNP list (GTRD) (workflow) (3 categories)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (3 categories)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (3 categories)
- Biouml.plugins.bionetgen (plugin) (3 categories)
- Biouml.plugins.chipmunk (plugin) (3 categories)
- Identify enriched motifs in promoters (GTRD) (workflow) (3 categories)
- Biouml.plugins.enrichment (plugin) (3 categories)
- Biouml.plugins.genomeenhancer (plugin) (3 categories)
- Biouml.plugins.gxl (plugin) (3 categories)
- Ru.biosoft.access.search (plugin) (3 categories)
- Biouml.plugins.metabolics (plugin) (3 categories)
- Ru.biosoft.galaxy (plugin) (3 categories)
- Biouml.plugins.optimization (plugin) (3 categories)
- Ru.biosoft.proteome (plugin) (3 categories)
- Biouml.plugins.research (plugin) (3 categories)
- Ru.biosoft.workbench (plugin) (3 categories)
- Find 10 master regulators in networks (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.seek (plugin) (3 categories)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (3 categories)
- Find genome variants and indels from RNA-seq (workflow) (3 categories)
- Biouml.plugins.transfac (plugin) (3 categories)
- Mapping to ontologies for multiple gene sets (workflow) (3 categories)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) (3 categories)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (3 categories)
- Analyze SNP list (TRANSFAC(R)) (workflow) (3 categories)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (3 categories)
- Biouml.plugins.biopax (plugin) (3 categories)
- Biouml.plugins.cma (plugin) (3 categories)
- Reads to matrices (workflow) (3 categories)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.ensembl (plugin) (3 categories)
- Biouml.plugins.ginsim (plugin) (3 categories)
- Biouml.plugins.hemodynamics (plugin) (3 categories)
- Ru.biosoft.access (plugin) (3 categories)
- Biouml.plugins.microarray (plugin) (3 categories)
- Ru.biosoft.graph (plugin) (3 categories)
- Biouml.plugins.pass (plugin) (3 categories)
- Ru.biosoft.server.servlets (plugin) (3 categories)
- Biouml.plugins.riboseqArticleResult (plugin) (3 categories)
- Ru.biosoft.works (plugin) (3 categories)
- Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.server (plugin) (3 categories)
- Mapping to ontologies (Gene table) (workflow) (3 categories)
- Find genome variants and indels from full-genome NGS (workflow) (3 categories)
- Biouml.plugins.transpath (plugin) (3 categories)
- Mapping to ontology - select a classification (2 Gene tables) (workflow) (3 categories)
- Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) (3 categories)
- Flux Balance Analysis (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Gene table) (workflow) (3 categories)
- Com.developmentontheedge.beans (plugin) (3 categories)
- Compute differentially expressed genes (Agilent probes) (workflow) (3 categories)
- Analyze any DNA sequence, EMBL (workflow) (3 categories)
- Analyze promoters (GTRD) (workflow) (3 categories)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (3 categories)
- Biouml.plugins.bkl (plugin) (3 categories)
- Biouml.plugins.creasemarks (plugin) (3 categories)
- Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.expasy (plugin) (3 categories)
- Biouml.plugins.glycan (plugin) (3 categories)
- Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.illumina (plugin) (3 categories)
- Ru.biosoft.analysis.optimization (plugin) (3 categories)
- Biouml.plugins.mirbase (plugin) (3 categories)
- Ru.biosoft.graphics (plugin) (3 categories)
- Biouml.plugins.pathfinder (plugin) (3 categories)
- Ru.biosoft.server.tomcat (plugin) (3 categories)
- Biouml.plugins.riboseq (plugin) (3 categories)
- Find common effectors for multiple gene sets (GeneWays) (workflow) (3 categories)
- Biouml.plugins.simulation-test (plugin) (3 categories)
- Mapping to ontologies (HumanPSD(TM)) (workflow) (3 categories)
- Biouml.plugins.uniprot (plugin) (3 categories)
- Mapping to ontology - select a classification (Gene table) (workflow) (3 categories)
- Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (3 categories)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) (3 categories)
- Com.developmentontheedge.server (plugin) (3 categories)
- Compute differentially expressed genes (Illumina probes) (workflow) (3 categories)
- Analyze any DNA sequence, Fasta (workflow) (3 categories)
- Analyze promoters (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.affymetrix (plugin) (3 categories)
- Biouml.plugins.bowtie (plugin) (3 categories)
- Biouml.plugins.cytoscape (plugin) (3 categories)
- Identify enriched motifs in tissue specific tracks (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.expression (plugin) (3 categories)
- Biouml.plugins.gne (plugin) (3 categories)
- Biouml.plugins.kegg (plugin) (3 categories)
- Ru.biosoft.analysis (plugin) (3 categories)
- Biouml.plugins.miriam (plugin) (3 categories)
- Ru.biosoft.jobcontrol (plugin) (3 categories)
- Biouml.plugins.perfectosape (plugin) (3 categories)
- Ru.biosoft.server (plugin) (3 categories)
- Sbw (host object) (2 categories)
- Categories - GTRD (2 categories)
- GWAS format (2 categories)
- Modular model of the human CVS v.1 (2 categories)
- GeneNet (2 categories)
- Genes - BKL (2 categories)
- Table (host object) (2 categories)
- Pindel output (file format) (2 categories)
- Probes - Affymetrix RaGene-2-0-st (2 categories)
- Probes - Illumina (2 categories)
- Proteins - Ensembl (2 categories)
- Genes - Unigene (2 categories)
- Proteins - Transfac (2 categories)
- Hemodynamics model (file format) (2 categories)
- Creating Galaxy tool (2 categories)
- Das (host object) (2 categories)
- R installation (2 categories)
- KEGG (reference type) (2 categories)
- SED-ML file (2 categories)
- Categories - Gene ontology (2 categories)
- ChIP-seq peaks - GTRD (2 categories)
- Normalize (host object) (2 categories)
- General Feature Format (2 categories)
- Optimization (host object) (2 categories)
- Genes - Ensembl (2 categories)
- Substances (reference type) (2 categories)
- Probes - Affymetrix ST (2 categories)
- BioBlend (2 categories)
- Proteins - GTRD (2 categories)
- Proteins - Transpath (2 categories)
- DataFilter (host object) (2 categories)
- Disease - MeSH (2 categories)
- EMBL format (2 categories)
- Types (extension point) (2 categories)
- SEDX archive (file format) (2 categories)
- Cdk (host object) (2 categories)
- Galaxy (host object) (2 categories)
- SimulationEngine (host object) (2 categories)
- Site models - GTRD (2 categories)
- Chipmunk (host object) (2 categories)
- Classification hub (2 categories)
- Genes - Entrez (2 categories)
- Substances - CAS (2 categories)
- Affymetrix CEL file (2 categories)
- Transcripts (reference type) (2 categories)
- Probes (reference type) (2 categories)
- Transplorer (2 categories)
- Probes - Affymetrix miRNA-1-0 (2 categories)
- BioCloudCentral (2 categories)
- Proteins - GenBank (2 categories)
- BioUML format (2 categories)
- Proteins - Transpath complexes (2 categories)
- Data (host object) (2 categories)
- Illumina microarray file (2 categories)
- Ensembl (host object) (2 categories)
- Varscan output (file format) (2 categories)
- SAM or BAM alignment file (2 categories)
- Matching BioHub (2 categories)
- Mature-miRNA - miRBase (2 categories)
- CellML (file format) (2 categories)
- Microarray (host object) (2 categories)
- Galaxy cloud (2 categories)
- Substances - ChEBI (2 categories)
- Perfectosape (host object) (2 categories)
- Tabular (file format) (2 categories)
- Transcripts - Ensembl (2 categories)
- Probes - Affymetrix (2 categories)
- Probes - Affymetrix miRNA-2-0 (2 categories)
- Proteins - IPI (2 categories)
- Proteins - Transpath isogroups (2 categories)
- Hormone - EndoNet (2 categories)
- Report (host object) (2 categories)
- Fasta format (2 categories)
- SBGN-ML (file format) (2 categories)
- SIF (file format) (2 categories)
- Matrices (reference type) (2 categories)
- CNVnator genotype output (file format) (2 categories)
- Ftp (host object) (2 categories)
- Cell - EndoNet (2 categories)
- Galaxy installation (2 categories)
- SiteAnalysis (host object) (2 categories)
- Gene Transfer Format (2 categories)
- Network (host object) (2 categories)
- CloudBioLinux (2 categories)
- Stem-loop-miRNA - miRBase (2 categories)
- Overall circulation model (2 categories)
- Substances - DrugBank (2 categories)
- TRANSFAC matrices format (2 categories)
- Agilent microarray file (2 categories)
- Transcripts - Illumina (2 categories)
- Probes - Affymetrix HG-U133+ PM (2 categories)
- Antimony (file format) (2 categories)
- Probes - Affymetrix miRNA-3-0 (2 categories)
- Genes - GenBank (2 categories)
- Proteins - NCBI (2 categories)
- Proteins - Transpath modified forms (2 categories)
- Biohub (host object) (2 categories)
- Cytoscape network format (2 categories)
- Enzymes - ExPASy (2 categories)
- Fastq compressed (file format) (2 categories)
- Unspecified (reference type) (2 categories)
- Wiggle format (2 categories)
- Fastq format (2 categories)
- SBML(CellDesigner) (file format) (2 categories)
- SISSRs output (file format) (2 categories)
- Matrices - GTRD (2 categories)
- Categories (reference type) (2 categories)
- ModelReduction (host object) (2 categories)
- Galaxy method (element type) (2 categories)
- ChIP experiment - GTRD (2 categories)
- Node (host object) (2 categories)
- CloudMan (2 categories)
- Substances - DrugBank (geneXplain) (2 categories)
- Pathways (reference type) (2 categories)
- TRANSFAC profile (file format) (2 categories)
- Transcripts - RefSeq (2 categories)
- Probes - Affymetrix HTA-2-0 (2 categories)
- Probes - Affymetrix miRNA-4-0 (2 categories)
- Proteins (reference type) (2 categories)
- Genes - Gene symbol (2 categories)
- BioNetGen language format (2 categories)
- Proteins - PDB (2 categories)
- Proteins - Transpath peptides (2 categories)
- HTML file (2 categories)
- IPython format (2 categories)
- Image file (2 categories)
- Interval format (2 categories)
- Enzymes - KEGG (2 categories)
- MGL (2 categories)
- SBML (file format) (2 categories)
- SNP (reference type) (2 categories)
- Breakdancer output (file format) (2 categories)
- Matrices - TRANSFAC (2 categories)
- Categories - BKL (2 categories)
- Methylation probes - Illumina (2 categories)
- Model (host object) (2 categories)
- Generic file (2 categories)
- Substances - KEGG (2 categories)
- Pathways - Reactome (2 categories)
- TRRD (2 categories)
- Text file (2 categories)
- Transform (host object) (2 categories)
- Probes - Affymetrix HuGene-2-0-st (2 categories)
- Probes - Agilent (2 categories)
- BED format (2 categories)
- Proteins - BKL (2 categories)
- Genes - Illumina (2 categories)
- BioPAX file (2 categories)
- Proteins - Reactome (2 categories)
- Proteins - UniProt (2 categories)
- VAT output (file format) (2 categories)
- Bsa (host object) (2 categories)
- Sbml (host object) (2 categories)
- Categories - ExPASy (2 categories)
- MiRNA - miRBase (2 categories)
- GenBank format (2 categories)
- Genes (reference type) (2 categories)
- Structures - PDB (2 categories)
- Substances - Pharmaceutical compounds (2 categories)
- Pathways - Transpath (2 categories)
- Text output file generated by R (file format) (2 categories)
- Analyses (extension point) (2 categories)
- Probes - Affymetrix HuGene-2-1-st (2 categories)
- Probes - Agilent Tox Array (2 categories)
- Proteins - EndoNet (2 categories)
- Genes - Transpath (2 categories)
- BioUML Simulation result (file format) (2 categories)
- Proteins - RefSeq (2 categories)
- GinSim (file format) (2 categories)
- R (host object) (2 categories)
- Drugs - DrugBank (2 categories)
- Enrichment (host object) (2 categories)
- Isoforms - GTRD (2 categories)
- VCF format (2 categories)
- ZIP-archive (file format) (2 categories)
