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- Mapping to ontologies (HumanPSD(TM)) (workflow) (2 revisions)
- Methylation probes - Illumina (2 revisions)
- Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow) (2 revisions)
- Calculate TFs regulatory score (analysis) (2 revisions)
- Check quotas (analysis) (2 revisions)
- Probes - Affymetrix RaGene-2-0-st (2 revisions)
- Text (element type) (2 revisions)
- Using Galaxy in BioUML (2 revisions)
- Import from TranSMART (analysis) (2 revisions)
- Limma (analysis) (2 revisions)
- Find master regulators in mutated network (workflow) (2 revisions)
- Galaxy (2 revisions)
- Profile (element type) (2 revisions)
- IPython format (2 revisions)
- R (host object) (2 revisions)
- MSAT (analysis) (2 revisions)
- Filter SPAdes output (2 revisions)
- Flux Balance Analysis (workflow) (2 revisions)
- Prepare target genes by expression (analysis) (2 revisions)
- Context item (extension point) (2 revisions)
- Proteins - NCBI (2 revisions)
- Transformer (extension point) (2 revisions)
- Univariate samples analysis (2 revisions)
- Identify enriched motifs in tracks (TRANSFAC(R)) (workflow) (2 revisions)
- Reduce track (analysis) (2 revisions)
- MiRNA - miRBase (2 revisions)
- Chipmunk (host object) (2 revisions)
- Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) (2 revisions)
- Analyze miRNA target enrichment (analysis) (2 revisions)
- Convert table to VCF track (analysis) (2 revisions)
- Using R in BioUML (2 revisions)
- DNase-seq Group and Profile Generation (Previous version) (analysis) (2 revisions)
- Sbml (host object) (2 revisions)
- SimulationEngine (host object) (2 revisions)
- Optimization (host object) (2 revisions)
- Galaxy (host object) (2 revisions)
- Profiles Statistics (analysis) (2 revisions)
- Coverage Profiles Cutoff (analysis) (2 revisions)
- Default (perspective) (2 revisions)
- Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (2 revisions)
- Select files from folder (analysis) (2 revisions)
- Softberry (perspective) (2 revisions)
- Create tissue-specific promoter track (analysis) (2 revisions)
- KEGG (reference type) (2 revisions)
- Mapping to ontologies and comparison for two gene sets (HumanPSD(TM)) (workflow) (2 revisions)
- MiRNA feed forward loops (analysis) (2 revisions)
- Calculate weighted mutation score (analysis) (2 revisions)
- Normalization quality plots (analysis) (2 revisions)
- ChromatinInfo table creation (analysis) (2 revisions)
- Perfectosape (host object) (2 revisions)
- Stub process file (analysis) (2 revisions)
- Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) (2 revisions)
- Probes - Affymetrix miRNA-1-0 (2 revisions)
- DNase-seq Group and Profile Generation (analysis) (2 revisions)
- Bioumlsim (2 revisions)
- Sbw (host object) (2 revisions)
- Galaxy admin (2 revisions)
- Systems biology - basic model editing (2 revisions)
- Virtual physiological human (2 revisions)
- Mutation effect on sites advanced (analysis) (2 revisions)
- Preprocessor (extension point) (2 revisions)
- TRRD viewer (2 revisions - redirect page)
- Genome browser (2 revisions)
- Illumina microarray file (2 revisions)
- Create transcript region track (analysis) (2 revisions)
- Biouml.plugins.machinelearning (plugin) (2 revisions)
- Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow) (2 revisions)
- SNP regions in genome (analysis) (2 revisions)
- Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow) (2 revisions)
- Categories (reference type) (2 revisions)
- Substances (reference type) (2 revisions)
- Gene set enrichment analysis HumanPSD (Gene table) (workflow) (2 revisions)
- Compute coverage by window (analysis) (2 revisions)
- Probes - Affymetrix miRNA-2-0 (2 revisions)
- Guided linear model analysis (2 revisions)
- Fast table filter (analysis) (2 revisions)
- Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) (2 revisions)
- Affymetrix CEL file (2 revisions)
- Population generation (analysis) (2 revisions)
- Create matrix logo (analysis) (2 revisions)
- COVID-19 parameters for Lung (2 revisions)
- Mutations to genes with weights (analysis) (2 revisions)
- Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (2 revisions)
- Tree-table (element type) (2 revisions)
- BioUML Simulation result (file format) (2 revisions)
- Update master track (analysis) (2 revisions)
- Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) (2 revisions)
- Categories - BKL (2 revisions)
- Servers (2 revisions)
- Normalize Affymetrix experiment and control (analysis) (2 revisions)
- GTEX Mutation effect on sites (analysis) (2 revisions)
- Substances - CAS (2 revisions)
- Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) (2 revisions)
- Compute coverage profile (analysis) (2 revisions)
- Probes - Affymetrix miRNA-3-0 (2 revisions)
- Convert tracks to VCF (analysis) (2 revisions)
- Install HumanPSD(TM) database (analysis) (2 revisions)
- Biouml.plugins.pathfinder (plugin) (2 revisions)
- ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow) (2 revisions)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (2 revisions)
