Ru.biosoft.bsa (plugin)
From BioUML platform
Revision as of 11:08, 7 May 2013 by BioUML wiki Bot (Talk | contribs)
- ID
- ru.biosoft.bsa
- Name
- Bio-sequences analyses plugin
- Provider
- Institute of Systems Biology
- Version
- 0.9.4
Analysis methods
Analysis methods defined in this plugin:
- Analysis of Binding Regions
- Analysis of Cis-Regulatory Modules
- Analysis of SNPs and Binding sites
- ChIP-seq peak profile
- Change profile cutoffs
- Chromosome enrichment
- Compare site models
- Construct IPS CisModule
- Convert site models to proteins
- Convert table to track
- Create IPS model
- Create Match model
- Create profile from gene table
- Create profile from table
- Create weight matrix model
- Filter one track by another
- Filter track by condition
- GC island finder
- Gene set to track
- Genome coverage
- Heterozygous site caller
- IPS motif discovery
- Join tracks
- Merge track statistics
- MicroRNA aligner
- Motif quality analysis
- Preprocess raw reads
- Process track with sites
- Read counter
- Run MACS 1_3_7 on ChiP-Seq
- Run MACS 1_4_0 on ChiP-Seq
- SNP matching
- Site counts in repeats
- Site search on gene set
- Site search on track
- Site search result optimization
- Site search summary
- Track coverage
- Track statistics
