Difference between revisions of "Biouml.plugins.riboseq (plugin)"
From BioUML platform
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*[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | *[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]] | ||
*[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | *[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Mappability histogram (analysis)|Mappability histogram]] | ||
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | *[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]] | ||
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | *[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]] | ||
Latest revision as of 16:35, 12 March 2019
- ID
- biouml.plugins.riboseq
- Name
- RiboSeq Experiment
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
[edit] Analysis methods
Analysis methods defined in this plugin:
ArticleComparator
- ArticleTrackCreator
- BAM filter multi-hits
- BAM filter strand specific
- BuildASiteOffsetTable
- BuildProfileModel
- ComputeProfileSums
- ComputeTranscriptProfile
- Convert genomic BAM to transcriptomic
- Count reads in transcripts
- CoverageCheker
- Estimate read density
- Find unmappable regions
- FinderArticlePoints
- Isoform TE
- Large sequence minimal unique length
- Make GTF for riboseq alignment
- Mappability histogram
- PredictStartSites
- RiboSeqExp
- SVM
- SelectionTrustClusters
- Sequence mappability
- Sequence minimal unique length
- Transcript structure analysis
- Transcriptome mappability
- Transcriptome minimal unique length
[edit] Perspectives
Perspectives defined in this plugin:
