Difference between revisions of "Biouml.plugins.riboseq (plugin)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Version
 
;Version
:0.9.9
+
:0.9.10
  
 
=== Analysis methods ===
 
=== Analysis methods ===
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*[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]]
 
*[[File:Default-analysis-icon.png]] [[ArticleComparator (analysis)|ArticleComparator]]
 
*[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]]
 
*[[File:Default-analysis-icon.png]] [[ArticleTrackCreator (analysis)|ArticleTrackCreator]]
 +
*[[File:Default-analysis-icon.png]] [[BAM filter multi-hits (analysis)|BAM filter multi-hits]]
 +
*[[File:Default-analysis-icon.png]] [[BAM filter strand specific (analysis)|BAM filter strand specific]]
 
*[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]]
 
*[[File:Default-analysis-icon.png]] [[BuildASiteOffsetTable (analysis)|BuildASiteOffsetTable]]
 
*[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]]
 
*[[File:Default-analysis-icon.png]] [[BuildProfileModel (analysis)|BuildProfileModel]]
 +
*[[File:Default-analysis-icon.png]] [[ComputeProfileSums (analysis)|ComputeProfileSums]]
 
*[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]]
 
*[[File:Default-analysis-icon.png]] [[ComputeTranscriptProfile (analysis)|ComputeTranscriptProfile]]
 +
*[[File:Default-analysis-icon.png]] [[Convert genomic BAM to transcriptomic (analysis)|Convert genomic BAM to transcriptomic]]
 +
*[[File:Default-analysis-icon.png]] [[Count reads in transcripts (analysis)|Count reads in transcripts]]
 
*[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]]
 
*[[File:Default-analysis-icon.png]] [[CoverageCheker (analysis)|CoverageCheker]]
 +
*[[File:Default-analysis-icon.png]] [[Estimate read density (analysis)|Estimate read density]]
 +
*[[File:Default-analysis-icon.png]] [[Find unmappable regions (analysis)|Find unmappable regions]]
 
*[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]]
 
*[[File:Default-analysis-icon.png]] [[FinderArticlePoints (analysis)|FinderArticlePoints]]
 +
*[[File:Default-analysis-icon.png]] [[Isoform TE (analysis)|Isoform TE]]
 +
*[[File:Default-analysis-icon.png]] [[Large sequence minimal unique length (analysis)|Large sequence minimal unique length]]
 +
*[[File:Default-analysis-icon.png]] [[Make GTF for riboseq alignment (analysis)|Make GTF for riboseq alignment]]
 +
*[[File:Default-analysis-icon.png]] [[Mappability histogram (analysis)|Mappability histogram]]
 
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]]
 
*[[File:Default-analysis-icon.png]] [[PredictStartSites (analysis)|PredictStartSites]]
 
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]]
 
*[[File:Default-analysis-icon.png]] [[RiboSeqExp (analysis)|RiboSeqExp]]
 
*[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]]
 
*[[File:Default-analysis-icon.png]] [[SVM (analysis)|SVM]]
 
*[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]]
 
*[[File:Default-analysis-icon.png]] [[SelectionTrustClusters (analysis)|SelectionTrustClusters]]
 +
*[[File:Default-analysis-icon.png]] [[Sequence mappability (analysis)|Sequence mappability]]
 +
*[[File:Default-analysis-icon.png]] [[Sequence minimal unique length (analysis)|Sequence minimal unique length]]
 +
*[[File:Default-analysis-icon.png]] [[Transcript structure analysis]]
 +
*[[File:Default-analysis-icon.png]] [[Transcriptome mappability (analysis)|Transcriptome mappability]]
 +
*[[File:Default-analysis-icon.png]] [[Transcriptome minimal unique length (analysis)|Transcriptome minimal unique length]]
  
 
=== Perspectives ===
 
=== Perspectives ===

Latest revision as of 16:35, 12 March 2019

ID
biouml.plugins.riboseq
Name
RiboSeq Experiment
Provider
Institute of Systems Biology
Version
0.9.10

[edit] Analysis methods

Analysis methods defined in this plugin:

[edit] Perspectives

Perspectives defined in this plugin:

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