SiteAnalysis (host object)

Host object name

siteAnalysis

Class

JavaScriptSiteAnalysis

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

JavaScript host object:

ScriptableObject siteAnalysis

Analyses related to sites, sequences and tracks

Functions:

• String bowtie({parameters})

  Launches analysis "Bowtie"

• String filterCondition({parameters})

  Launches analysis "Filter track by condition"

• String filterProfileByGeneSet({parameters})

  Launches analysis "Create profile from gene table"

• String geneOverlap({parameters})

  Launches analysis "Gene overlap statistics"

• String geneSetToTrack({parameters})

  Launches analysis "Gene set to track"

• String joinTracks({parameters})

  Launches analysis "Join tracks"

• String mergeStats({parameters})

  Launches analysis "Merge track statistics"

• String motifDiscoveryIPS({parameters})

  Launches analysis "IPS motif discovery"

• String preprocessReads({parameters})

  Launches analysis "Preprocess raw reads"

• String profileFromTable({parameters})

  Launches analysis "Create profile from site model table"

• String siteDistribution({parameters})

  Launches analysis "Site distribution"

• String siteModelsToProteins({parameters})

  Launches analysis "Convert site models to proteins"

• String tableToTrack({parameters})

  Launches analysis "Convert table to track"

• String trackCoverage({parameters})

  Launches analysis "Track coverage"

• String trackStats({parameters})

  Launches analysis "Track statistics"

• String transcriptSetToTrack({parameters})

  Launches analysis "Transcript set to track"