Difference between revisions of "SiteAnalysis (host object)"
From BioUML platform
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*:Launches analysis "[[Preprocess raw reads (analysis)|Preprocess raw reads]]" | *:Launches analysis "[[Preprocess raw reads (analysis)|Preprocess raw reads]]" | ||
* String '''profileFromTable'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | * String '''profileFromTable'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | ||
| − | *:Launches analysis "[[Create profile from table (analysis)|Create profile from table]]" | + | *:Launches analysis "[[Create profile from site model table (analysis)|Create profile from site model table]]" |
* String '''siteDistribution'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | * String '''siteDistribution'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | ||
*:Launches analysis "[[Site distribution (analysis)|Site distribution]]" | *:Launches analysis "[[Site distribution (analysis)|Site distribution]]" | ||
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* String '''trackStats'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | * String '''trackStats'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | ||
*:Launches analysis "[[Track statistics (analysis)|Track statistics]]" | *:Launches analysis "[[Track statistics (analysis)|Track statistics]]" | ||
| + | * String '''transcriptSetToTrack'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>) | ||
| + | *:Launches analysis "[[Transcript set to track (analysis)|Transcript set to track]]" | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 16:18, 11 December 2014
- Host object name
- siteAnalysis
- Class
JavaScriptSiteAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] JavaScript host object:
ScriptableObject siteAnalysis
Analyses related to sites, sequences and tracks
[edit] Functions:
- String bowtie({parameters})
- Launches analysis "Bowtie"
- String filterCondition({parameters})
- Launches analysis "Filter track by condition"
- String filterProfileByGeneSet({parameters})
- Launches analysis "Create profile from gene table"
- String geneOverlap({parameters})
- Launches analysis "Gene overlap statistics"
- String geneSetToTrack({parameters})
- Launches analysis "Gene set to track"
- String joinTracks({parameters})
- Launches analysis "Join tracks"
- String mergeStats({parameters})
- Launches analysis "Merge track statistics"
- String motifDiscoveryIPS({parameters})
- Launches analysis "IPS motif discovery"
- String preprocessReads({parameters})
- Launches analysis "Preprocess raw reads"
- String profileFromTable({parameters})
- Launches analysis "Create profile from site model table"
- String siteDistribution({parameters})
- Launches analysis "Site distribution"
- String siteModelsToProteins({parameters})
- Launches analysis "Convert site models to proteins"
- String tableToTrack({parameters})
- Launches analysis "Convert table to track"
- String trackCoverage({parameters})
- Launches analysis "Track coverage"
- String trackStats({parameters})
- Launches analysis "Track statistics"
- String transcriptSetToTrack({parameters})
- Launches analysis "Transcript set to track"
