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- Biouml.plugins.sbml (plugin) (5,887 views)
- Proteins - IPI (5,864 views)
- Genes - Entrez (5,855 views)
- TRANSFAC matrices format (5,855 views)
- Biouml.plugins.modelreduction (plugin) (5,851 views)
- SISSRs output (file format) (5,815 views)
- Biouml.plugins.reactome (plugin) (5,812 views)
- Track statistics (analysis) (5,804 views)
- Host object (extension point) (5,791 views)
- Biouml.plugins.go (plugin) (5,789 views)
- Map to Transpath (analysis) (5,787 views)
- Track coverage (analysis) (5,721 views)
- GinSim (file format) (5,709 views)
- Ru.biosoft.graph (plugin) (5,702 views)
- Biouml.plugins.bowtie (plugin) (5,656 views)
- to user communication (5,619 views)
- Pindel output (file format) (5,596 views)
- Ru.biosoft.plugins.jri (plugin) (5,592 views)
- Fastq mcf (5,541 views)
- Binding regions summary (analysis) (5,520 views)
- General control panel (5,520 views)
- CellML (file format) (5,514 views)
- Export (extension point) (5,493 views)
- Proteins - UniProt (5,485 views)
- Ru.biosoft.analysis.optimization (plugin) (5,458 views)
- Tabular (file format) (5,443 views)
- Biouml.plugins.keynodes (plugin) (5,404 views)
- Biouml.plugins.chemoinformatics (plugin) (5,391 views)
- Biouml.plugins.obo (plugin) (5,344 views)
- Stoichiometric Matrix (analysis) (5,344 views)
- Site search on gene set (analysis) (5,331 views)
- Tools Comparison (5,331 views)
- Visualize results (analysis) (5,327 views)
- Create matrix by mixture of normal components (analysis) (5,320 views)
- Biouml.plugins.sbw (plugin) (5,295 views)
- Biouml.plugins.optimization (plugin) (5,273 views)
- ChIP-Seq characteristics distribution (analysis) (5,246 views)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (5,227 views)
- Reference type (5,223 views)
- Parameter identifiability example (5,217 views)
- Site counts in repeats (analysis) (5,201 views)
- Biouml.plugins.transpath (plugin) (5,191 views)
- Databases installation (5,190 views)
- Euler (5,184 views)
- Document pane (5,182 views)
- Site search result optimization (analysis) (5,129 views)
- SBML(CellDesigner) (file format) (5,123 views)
- Biouml.plugins.sedml (plugin) (5,121 views)
- Common class (extension point) (5,113 views)
- Genome browser (5,109 views)
- Classification hub (5,106 views)
- Count olig frequencies (analysis) (5,061 views)
- Track to gene set (analysis) (5,033 views)
- Categories - GTRD (5,032 views)
- Ru.biosoft.server.servlets (plugin) (4,981 views)
- Biouml.plugins.simulation (plugin) (4,961 views)
- Autosome.Ru (4,960 views)
- Reactome (4,947 views)
- Classification analysis (4,945 views)
- Ru.biosoft.templates (plugin) (4,944 views)
- Ru.biosoft.plugins.javascript (plugin) (4,941 views)
- IPS ROC-curves (analysis) (4,926 views)
- Proteins - Ensembl (4,912 views)
- Biouml.plugins.sabiork (plugin) (4,908 views)
- Matrix (element type) (4,905 views)
- Up and Down Identification (analysis) (4,885 views)
- Biouml.plugins.agentmodeling (plugin) (4,881 views)
- Biouml.plugins.geneways (plugin) (4,876 views)
- Biouml.plugins.microarray (plugin) (4,868 views)
- Biouml.plugins.ginsim (plugin) (4,863 views)
- Biouml.plugins.graphml (plugin) (4,858 views)
- Proteins - Reactome (4,848 views)
- Locations of best sites (analysis) (4,838 views)
- Proteins - RefSeq (4,838 views)
- Transcripts - Ensembl (4,825 views)
- Biouml.plugins.gne (plugin) (4,824 views)
- Biouml.plugins.genemodels (plugin) (4,801 views)
- Biouml.plugins.users (plugin) (4,790 views)
- Ru.biosoft.works (plugin) (4,786 views)
- Biouml.plugins.expression (plugin) (4,777 views)
- KeyNodes hub (4,761 views)
- Biouml.plugins.illumina (plugin) (4,758 views)
- Biouml.plugins.kegg (plugin) (4,758 views)
- Biouml.plugins.matlab (plugin) (4,754 views)
- Validate Experiments (analysis) (4,738 views)
- Mixture of normal components (analysis) (4,737 views)
- Cell type specific TFBS prediction (4,716 views)
- TRANSFAC profile (file format) (4,714 views)
- Correlations of best sites (analysis) (4,712 views)
- Ru.biosoft.access.search (plugin) (4,708 views)
- Table (element type) (4,686 views)
- ChIP-seq peaks - GTRD (4,684 views)
- BioUML - systems biology (4,675 views)
- GC island finder (analysis) (4,661 views)
- Ru.biosoft.server.tomcat (plugin) (4,637 views)
- Cell - EndoNet (4,630 views)
- Probes - Affymetrix (4,624 views)
- Hash parameters (4,591 views)
- Biouml.plugins.uniprot (plugin) (4,579 views)
- Biouml.workbench.graph (plugin) (4,573 views)
- Site search summary (analysis) (4,548 views)
- Biouml.plugins.simulation-test (plugin) (4,546 views)
- Biouml.plugins.wiki (plugin) (4,539 views)
- Com.developmentontheedge.util (plugin) (4,535 views)
- Ru.biosoft.math (plugin) (4,535 views)
- Ru.biosoft.services (plugin) (4,529 views)
- Biouml.plugins.psimi (plugin) (4,520 views)
- Cluster analysis (4,512 views)
- Biouml.plugins.lucene (plugin) (4,502 views)
- Analyze promoters (GTRD) (workflow) (4,499 views)
- Biouml.plugins.biopax (plugin) (4,498 views)
- Biouml.plugins.softberry (plugin) (4,482 views)
- Distinct TF classes (analysis) (4,481 views)
- Biouml.plugins.svg (plugin) (4,479 views)
- Select table columns (analysis) (4,468 views)
- Biouml.plugins.test (plugin) (4,460 views)
- BioGears (4,450 views)
- Genes - Unigene (4,450 views)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (4,435 views)
- ZIP-archive (file format) (4,418 views)
- Biouml.plugins.proteinmodel (plugin) (4,412 views)
- Biouml.plugins.gxl (plugin) (4,410 views)
- Biouml.plugins.hemodynamics (plugin) (4,407 views)
- Biouml.plugins.sbgn (plugin) (4,400 views)
- Biouml.plugins.research (plugin) (4,398 views)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (4,395 views)
- Cis-module identification (analysis) (4,394 views)
- BioHub (4,377 views)
- Ru.biosoft.treetable (plugin) (4,375 views)
- Element type (4,358 views)
- Long-term model of the CVS/Renal system (4,339 views)
- Gathering genome statistics (analysis) (4,335 views)
- ChIP-seq Analysis (4,313 views)
- Proteins - GenBank (4,309 views)
- Text output file generated by R (file format) (4,305 views)
- Pathways - Transpath (4,301 views)
- Extract ribosomal RNA (analysis) (4,262 views)
- Varscan output (file format) (4,258 views)
- Biouml.plugins.genenet (plugin) (4,248 views)
- Biouml.plugins.server (plugin) (4,244 views)
- Probes - Agilent (4,191 views)
- Hormone - EndoNet (4,169 views)
- Research diagram (4,165 views)
- Glycan structures (4,160 views)
- Pathways - Reactome (4,159 views)
- Biouml.plugins.expasy (plugin) (4,154 views)
- Gene set enrichment analysis (Illumina probes) (workflow) (4,153 views)
- Biouml.plugins.stochastic (plugin) (4,138 views)
- Biouml.plugins.chebi (plugin) (4,126 views)
- Cluster track (analysis) (4,122 views)
- Isoforms - GTRD (4,112 views)
- Genes - Gene symbol (4,104 views)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (4,087 views)
- ROC curves for best sites union (analysis) (4,078 views)
- Softberry, Inc. (4,067 views)
- Non-merged ChIP-Seq tracks summary (analysis) (4,066 views)
- VAT output (file format) (4,060 views)
- Template (extension point) (4,043 views)
- Com.developmentontheedge.server (plugin) (4,039 views)
- File (element type) (4,030 views)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (4,017 views)
- Transcripts - RefSeq (4,012 views)
- Biouml.plugins.miriam (plugin) (4,011 views)
- Add reactants (analysis) (4,001 views)
- Site model (element type) (3,999 views)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (3,996 views)
- Mapping to ontologies for multiple gene sets (workflow) (3,995 views)
- Common and IPS scores correlation (analysis) (3,983 views)
- Merge binding regions for cell-lines (analysis) (3,970 views)
- Biouml.plugins.reactome.biohub (plugin) (3,966 views)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (3,951 views)
- BioPAX file (3,948 views)
- Categories - ExPASy (3,919 views)
- Biouml.plugins.pharm (plugin) (3,918 views)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (3,918 views)
- DDMoRe consortium (3,910 views)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (3,902 views)
- Biouml.plugins.perfectosape (plugin) (3,897 views)
- Matrices - GTRD (3,891 views)
- IPS prediction (analysis) (3,885 views)
- Analyze SNP list (TRANSFAC(R)) (workflow) (3,869 views)
- Server administrator (3,858 views)
- Site models - GTRD (3,854 views)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (3,848 views)
- Tutorials (3,840 views)
- Compute differentially expressed genes (Agilent probes) (workflow) (3,813 views)
- Biouml.plugins.mirbase (plugin) (3,810 views)
- Track (element type) (3,798 views)
- Tree-table (element type) (3,796 views)
- Method description HTML file (3,794 views)
- Contributors (3,785 views)
- Virtual physiological human (3,784 views)
- Biouml.plugins.antimony (plugin) (3,774 views)
- Analyze SNP list (GTRD) (workflow) (3,759 views)
- Perspective (extension point) (3,754 views)
- Sequence (element type) (3,737 views)
- Analysis of Binding Regions (analysis) (3,727 views)
- Install ExPASy (analysis) (3,720 views)
- Compute differentially expressed genes (Illumina probes) (workflow) (3,707 views)
- Apply CMA model to tracks (analysis) (3,705 views)
- Sensitivity analysis example (3,698 views)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (3,658 views)
- Annotate diagram (analysis) (3,656 views)
- Biouml.plugins.affymetrix (plugin) (3,651 views)
- Probes - Illumina (3,642 views)
- Beans (extension point) (3,640 views)
- Biouml.plugins.node (plugin) (3,630 views)
- ChIP-Seq peaks clusterization (analysis) (3,621 views)
- Matrices - TRANSFAC (3,600 views)
- Quasi-Steady-State Analysis (3,600 views)
- Data (host object) (3,599 views)
- Expression mapping (3,561 views)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (3,554 views)
- ChIP-Seq - Identify and classify target genes (workflow) (3,544 views)
- Product (3,525 views)
- Diagram graph compare analysis (3,519 views)
- Short term model of the heart output regulation (3,498 views)
- Biouml.plugins.riboseq (plugin) (3,482 views)
- Find common effectors in networks (GeneWays) (workflow) (3,470 views)
- Text (element type) (3,452 views)
- Reference type (extension point) (3,436 views)
- Antimony (file format) (3,419 views)
- Convert files to tracks (analysis) (3,417 views)
- ArticleComparator (analysis) (3,403 views)
- Moved class (extension point) (3,396 views)
- Virtual biology (3,395 views)
- Identical best site ROC-curves (analysis) (3,392 views)
- BuildASiteOffsetTable (analysis) (3,371 views)
- Transformer (extension point) (3,370 views)
- Join GTRD Tracks (analysis) (3,368 views)
- Plugin development (3,362 views)
- BuildProfileModel (analysis) (3,352 views)
- Genes - BKL (3,337 views)
- Probes - Affymetrix ST (3,337 views)
- Genes - Transpath (3,332 views)
- Color space to nucleotide (analysis) (3,328 views)
- ChIPMunk (perspective) (3,327 views)
- Application log (viewpart) (3,326 views)
- PharmML (3,324 views)
- RADAU V (3,319 views)
- Extract RNA length (analysis) (3,303 views)
- ComputeTranscriptProfile (analysis) (3,291 views)
- Gene set enrichment analysis (Agilent probes) (workflow) (3,290 views)
- Biouml.plugins.agilent (plugin) (3,288 views)
- Blast alignment coverage (analysis) (3,277 views)
- SEDX archive (file format) (3,276 views)
- Genes - Illumina (3,261 views)
- ArticleTrackCreator (analysis) (3,239 views)
- Drugs - DrugBank (3,238 views)
- ChIP experiment - GTRD (3,236 views)
