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- SDF file (2,226 bytes) (fully protected) (Protection log)
- SED-ML file (800 bytes) (fully protected) (Protection log)
- SIF (file format) (4,973 bytes) (fully protected) (Protection log)
- SISSRs output (file format) (913 bytes) (fully protected) (Protection log)
- TRANSFAC matrices format (541 bytes) (fully protected) (Protection log)
- TRANSFAC profile (file format) (605 bytes) (fully protected) (Protection log)
- Tabular (file format) (2,588 bytes) (fully protected) (Protection log)
- Text file (443 bytes) (fully protected) (Protection log)
- Text output file generated by R (file format) (411 bytes) (fully protected) (Protection log)
- Upload from FTP (analysis) (851 bytes) (fully protected) (Protection log)
- VAT output (file format) (313 bytes) (fully protected) (Protection log)
- VCF format (1,678 bytes) (fully protected) (Protection log)
- Varscan output (file format) (354 bytes) (fully protected) (Protection log)
- Wiggle format (7,073 bytes) (fully protected) (Protection log)
- ZIP-archive (file format) (887 bytes) (fully protected) (Protection log)
- Cluster by shortest path (analysis) (1,340 bytes) (fully protected) (Protection log)
- Effector search (analysis) (1,729 bytes) (fully protected) (Protection log)
- Extend network (analysis) (820 bytes) (fully protected) (Protection log)
- Join diagrams (analysis) (866 bytes) (fully protected) (Protection log)
- Map to Transpath (analysis) (644 bytes) (fully protected) (Protection log)
- Regulator search (analysis) (7,336 bytes) (fully protected) (Protection log)
- Save hits (analysis) (1,063 bytes) (fully protected) (Protection log)
- Save network (analysis) (971 bytes) (fully protected) (Protection log)
- Visualize results (analysis) (1,049 bytes) (fully protected) (Protection log)
- Cellular genetic algorithm (analysis) (2,184 bytes) (fully protected) (Protection log)
- Evolution strategy (SRES) (analysis) (3,357 bytes) (fully protected) (Protection log)
- GLBSOLVE (analysis) (1,887 bytes) (fully protected) (Protection log)
- Particle swarm optimization (analysis) (3,121 bytes) (fully protected) (Protection log)
- Quadratic Hill-climbing (analysis) (5,635 bytes) (fully protected) (Protection log)
- Simulation analysis (870 bytes) (fully protected) (Protection log)
- Correlation Analysis (2,428 bytes) (fully protected) (Protection log)
- Fold-Change calculation (analysis) (1,388 bytes) (fully protected) (Protection log)
- Hypergeometric analysis (5,783 bytes) (fully protected) (Protection log)
- Meta analysis (2,146 bytes) (fully protected) (Protection log)
- Polynomial Regression analysis (3,837 bytes) (fully protected) (Protection log)
- Up and Down Identification (analysis) (8,533 bytes) (fully protected) (Protection log)
- Category:Import (analyses group) (88 bytes) (fully protected) (Protection log)
- Category:Statistics (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:BSA (analyses group) (85 bytes) (fully protected) (Protection log)
- Category:Molecular networks (analyses group) (100 bytes) (fully protected) (Protection log)
- Category:Simulation (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:GTRD (analyses group) (86 bytes) (fully protected) (Protection log)
- Category:Admin (analyses group) (190 bytes) (fully protected) (Protection log)
- Category:Data (analyses group) (86 bytes) (fully protected) (Protection log)
- Category:GeneModels (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:Creasemarks (analyses group) (93 bytes) (fully protected) (Protection log)
- Category:DAS (analyses group) (85 bytes) (fully protected) (Protection log)
- Category:Optimization (analyses group) (94 bytes) (fully protected) (Protection log)
- Category:DAE models (analyses group) (92 bytes) (fully protected) (Protection log)
- MicroRNA aligner (analysis) (1,387 bytes) (fully protected) (Protection log)
- Building Flux Balance DataTable (analysis) (1,328 bytes) (fully protected) (Protection log)
- Flux Balance Constraint (analysis) (3,050 bytes) (fully protected) (Protection log)
- DiChIPMunk (analysis) (1,530 bytes) (fully protected) (Protection log)
- Category:ChIPMunk (analyses group) (90 bytes) (fully protected) (Protection log)
- DiChIPHorde (analysis) (1,721 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify and classify target genes (workflow) (1,597 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Agilent probes) (workflow) (2,212 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (2,236 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (1,990 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (2,062 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Illumina probes) (workflow) (2,214 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (1,993 bytes) (fully protected) (Protection log)
- Find common effectors in networks (GeneWays) (workflow) (1,248 bytes) (fully protected) (Protection log)
- Find master regulators in networks (GeneWays) (workflow) (1,390 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (1,723 bytes) (fully protected) (Protection log)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (1,735 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Agilent probes) (workflow) (1,575 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Illumina probes) (workflow) (1,728 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis (Gene table) (workflow) (1,311 bytes) (fully protected) (Protection log)
- Mapping to ontologies (Gene table) (workflow) (1,097 bytes) (fully protected) (Protection log)
- Mapping to ontologies for multiple gene sets (workflow) (1,366 bytes) (fully protected) (Protection log)
- Analyze promoters (GTRD) (workflow) (2,111 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (675 bytes) (fully protected) (Protection log)
- Analyze promoters (TRANSFAC(R)) (workflow) (2,074 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (712 bytes) (fully protected) (Protection log)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (3,087 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (779 bytes) (fully protected) (Protection log)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (1,799 bytes) (fully protected) (Protection log)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (1,343 bytes) (fully protected) (Protection log)
- Find common effectors in networks (TRANSPATH(R)) (workflow) (1,458 bytes) (fully protected) (Protection log)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (1,637 bytes) (fully protected) (Protection log)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (1,992 bytes) (fully protected) (Protection log)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (2,849 bytes) (fully protected) (Protection log)
- Category:ISB analyses (109 bytes) (fully protected) (Protection log)
- Category:Autosome.Ru analyses (92 bytes) (fully protected) (Protection log)
- Category:GeneXplain analyses (96 bytes) (fully protected) (Protection log)
- Category:GeneXplain workflows (98 bytes) (fully protected) (Protection log)
- GC island finder (analysis) (648 bytes) (fully protected) (Protection log)
- Biouml.plugins.agentmodeling (plugin) (210 bytes) (fully protected) (Protection log)
- Biouml.plugins.bionetgen (plugin) (366 bytes) (fully protected) (Protection log)
- Biouml.plugins.biopax (plugin) (345 bytes) (fully protected) (Protection log)
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- Biouml.plugins.bowtie (plugin) (314 bytes) (fully protected) (Protection log)
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- Biouml.plugins.chemoinformatics (plugin) (454 bytes) (fully protected) (Protection log)
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- Biouml.plugins.chebi (plugin) (637 bytes) (fully protected) (Protection log)
- Biouml.plugins.cma (plugin) (1,533 bytes) (fully protected) (Protection log)
- Biouml.plugins.creasemarks (plugin) (327 bytes) (fully protected) (Protection log)
- Biouml.plugins.das (plugin) (510 bytes) (fully protected) (Protection log)