User contributions
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- 12:19, 13 September 2013 (diff | hist) . . (+52) . . Method (extension point) (+Analysis method development) (top)
- 17:37, 12 September 2013 (diff | hist) . . (0) . . m File:Visual adding species to model step 2.png (Lan@dote.ru moved page File:Add species 2.png to File:Visual adding species to model step 2.png without leaving a redirect) (top)
- 17:37, 12 September 2013 (diff | hist) . . (0) . . m File:Visual adding species to model step 1.png (Lan@dote.ru moved page File:Add species 1.png to File:Visual adding species to model step 1.png) (top)
- 17:36, 12 September 2013 (diff | hist) . . (+48) . . Visual modeling (top)
- 17:36, 12 September 2013 (diff | hist) . . (+10) . . Visual modeling
- 17:35, 12 September 2013 (diff | hist) . . (0) . . m File:Visual modeling interface.png (Lan@dote.ru moved page File:Interface model.png to File:Visual modeling interface.png without leaving a redirect) (top)
- 17:02, 12 September 2013 (diff | hist) . . (+99) . . Category:Plugins (top)
- 17:01, 12 September 2013 (diff | hist) . . (+91) . . Category:Analyses (top)
- 17:00, 12 September 2013 (diff | hist) . . (+42) . . R installation
- 17:00, 12 September 2013 (diff | hist) . . (+14) . . Using R in BioUML (+rbiouml) (top)
- 16:59, 12 September 2013 (diff | hist) . . (-2) . . m Rbiouml
- 16:58, 12 September 2013 (diff | hist) . . (+518) . . N Rbiouml (Created page with "'''rbiouml''' is an {{{R}}} package which allows accessing BioUML server from R script. It's available on CRAN repository: http://cran.r-project.org/web/packages/rbiouml/ ...")
- 16:51, 12 September 2013 (diff | hist) . . (+16) . . Antimony
- 16:51, 12 September 2013 (diff | hist) . . (0) . . m File:Antimony adding species.png (Lan@dote.ru moved page File:Species.png to File:Antimony adding species.png without leaving a redirect) (top)
- 16:30, 12 September 2013 (diff | hist) . . (0) . . m Visual modeling (Typo)
- 16:30, 12 September 2013 (diff | hist) . . (+52) . . Visual modeling
- 16:29, 12 September 2013 (diff | hist) . . (0) . . m File:BioUML workbench Variables viewpart.png (Lan@dote.ru moved page File:Variables.png to File:BioUML workbench Variables viewpart.png without leaving a redirect) (top)
- 16:29, 12 September 2013 (diff | hist) . . (0) . . m File:BioUML workbench Parameters viewpart.png (Lan@dote.ru moved page File:Parameters.png to File:BioUML workbench Parameters viewpart.png) (top)
- 16:23, 12 September 2013 (diff | hist) . . (+41) . . m Analysis method development (+Creating custom parameter editor (stub))
- 16:22, 12 September 2013 (diff | hist) . . (+2,603) . . Analysis method development (→Implementing analysis)
- 16:00, 12 September 2013 (diff | hist) . . (+182) . . Analysis method development (+referenceType selector - →Registering complex parameters)
- 18:10, 11 September 2013 (diff | hist) . . (+585) . . Analysis method development
- 18:02, 11 September 2013 (diff | hist) . . (+3,638) . . Analysis method development (→Writing bean info class for parameters)
- 12:24, 11 September 2013 (diff | hist) . . (-10) . . BioUML exceptions (top)
- 12:23, 11 September 2013 (diff | hist) . . (+18) . . m Analysis method development (link to exceptions page fixed - →Logging)
- 12:23, 11 September 2013 (diff | hist) . . (+6,051) . . N Analysis method development (Preliminary description of analysis)
- 12:20, 11 September 2013 (diff | hist) . . (+239) . . N Template:Field (Created page with "<noinclude>Usage: <nowiki>{{Field|<fully_qualified_Java_field_name>}}</nowiki> </noinclude><includeonly><code title="{{{1}}}" style="border-bottom: 1px dotted black">{{#explo...") (top)
- 11:35, 10 September 2013 (diff | hist) . . (+4,536) . . N Plugin development (Created page with "This page describes steps necessary to create your own BioUML or BDK plugin. Suppose you want to create plugin named <code>biouml.plugins.myplugin</code>. All paths ar...") (top)
- 11:05, 10 September 2013 (diff | hist) . . (+36) . . N BDK (Redirected page to BioUML Development Kit) (top)
- 10:17, 28 August 2013 (diff | hist) . . (+4) . . Common class (extension point) ("name" -> "class") (top)
- 13:35, 26 August 2013 (diff | hist) . . (+2,440) . . N Document factory (extension point) (Created page with "{{Extension point|documentFactory|ru.biosoft.workbench}} ;Applicable for :BioUML workbench === Description === This extension points configures document type in [[BioUML w...") (top)
- 11:04, 19 August 2013 (diff | hist) . . (+167) . . Product (top)
- 11:02, 19 August 2013 (diff | hist) . . (+89) . . BioUML server (top)
- 11:00, 19 August 2013 (diff | hist) . . (+74) . . N Category:Administration (Created page with "This category contasins pages related to BioUML server administration.") (top)
- 11:00, 19 August 2013 (diff | hist) . . (+29) . . m Server administrator (+Category:Administration) (top)
- 10:59, 19 August 2013 (diff | hist) . . (+1,583) . . N Product (Created page with "'''Product''' is a subset of functionality provided by BioUML-based software (for example, BioUML server). Products are defined in BioStore in server configuration...")
- 11:07, 14 August 2013 (diff | hist) . . (+151) . . m Creating Galaxy tool (Formatting - →Configurable file format)
- 15:44, 7 August 2013 (diff | hist) . . (+1) . . m BioUML exceptions (Typo fixed - →Exception descriptors)
- 15:44, 7 August 2013 (diff | hist) . . (+98) . . BioUML exceptions (Logging levels updated - →Exception descriptors)
- 15:29, 6 August 2013 (diff | hist) . . (-11) . . GTRD (GTRD URL changed to gtrd.biouml.org)
- 10:42, 2 August 2013 (diff | hist) . . (+4) . . m Hash parameters (perspective link - →Known parameters) (top)
- 10:42, 2 August 2013 (diff | hist) . . (+46) . . Hash parameters (+perspective - →Known parameters)
- 10:18, 2 August 2013 (diff | hist) . . (+169) . . Hash parameters (+docOnly - →Known parameters)
- 12:35, 1 August 2013 (diff | hist) . . (+1,751) . . N Hash parameters (Created page with "'''Hash parameters''' are URL parameters supported by BioUML web edition which can be placed after hash (#) symbol. For example, in URL http://ie.biouml.org/bioumlweb#anon...")
- 11:32, 30 July 2013 (diff | hist) . . (+21) . . m Defines.js ({{BioUML current version}} used - →Example)
- 11:31, 30 July 2013 (diff | hist) . . (+24) . . Galaxy installation (glaunch location) (top)
- 15:22, 29 July 2013 (diff | hist) . . (-8) . . m BioUML server installation (Quotes - →bioumlsupport2 database)
- 18:07, 23 July 2013 (diff | hist) . . (0) . . m BioUML exceptions (BioSoft*Exception -> Biosoft*Exception)
- 18:00, 23 July 2013 (diff | hist) . . (+5) . . BioUML exceptions (BioUML*Exception -> BioSoft*Exception)
- 11:49, 23 July 2013 (diff | hist) . . (+611) . . BioUML exceptions (+Descriptors)
- 17:58, 22 July 2013 (diff | hist) . . (+6) . . BioUML exceptions (→Usage guidelines)
- 17:22, 22 July 2013 (diff | hist) . . (+296) . . BioUML exceptions (+getDataElement)
- 17:14, 22 July 2013 (diff | hist) . . (+7,113) . . N BioUML exceptions (Created page with "{{Draft}} This article describes new BioUML exception handling concept introduced in version 0.9.6. == Overview == '''BioUML exceptions''' (short: '''BUEX''') are descend...")
- 16:41, 22 July 2013 (diff | hist) . . (0) . . N File:Application log error log workbench.png (top)
- 16:45, 15 July 2013 (diff | hist) . . (+135) . . GO installation (+MySQL packet size info) (top)
- 11:46, 10 July 2013 (diff | hist) . . (+41) . . BioUML team (More user links)
- 11:41, 10 July 2013 (diff | hist) . . (+46) . . Lucene indexes creation (See also)
- 11:40, 10 July 2013 (diff | hist) . . (0) . . m Lucene indexes creation (Cosmetic)
- 11:36, 10 July 2013 (diff | hist) . . (+2,313) . . N Lucene indexes creation (Created page with "'''Lucene indexes''' are necessary for Lucene search to work. Indexes are created for each database separately in <code>databases</code> collection and stored inside <code...")
- 11:22, 10 July 2013 (diff | hist) . . (0) . . N File:Lucene indexes creation workbench process.png (top)
- 11:17, 10 July 2013 (diff | hist) . . (0) . . N File:Lucene indexes creation workbench.png (top)
- 16:46, 3 July 2013 (diff | hist) . . (+65) . . Tree-table document (+see also) (top)
- 16:45, 3 July 2013 (diff | hist) . . (+687) . . N Tree-table document (Created page with "'''Tree-table document''' is the default representation for {{Type link|tree-table}} elements. Currently this document type allows only viewing of {{Type link|tree-table}}s (n...")
- 16:41, 3 July 2013 (diff | hist) . . (0) . . N File:Type-tree-table-example-workbench.png (top)
- 16:34, 3 July 2013 (diff | hist) . . (+24) . . m Application log (viewpart) (+Category:Viewparts)
- 16:34, 3 July 2013 (diff | hist) . . (+852) . . N Application log (viewpart) (Created page with "Application log viewpart displaying the information messages of [[File:Data-Annotate-table-icon.png [[Annota...")
- 16:33, 3 July 2013 (diff | hist) . . (0) . . m Workflow (Lan@dote.ru moved page Workflows to Workflow: Plural to singular)
- 16:33, 3 July 2013 (diff | hist) . . (+22) . . N Workflows (Lan@dote.ru moved page Workflows to Workflow: Plural to singular) (top)
- 16:27, 3 July 2013 (diff | hist) . . (0) . . N File:BioUML workbench application log viewpart.png (top)
- 16:13, 3 July 2013 (diff | hist) . . (+1,469) . . Classification hub (Implementation via SqlCachedFunctionalHubSupport) (top)
- 15:57, 3 July 2013 (diff | hist) . . (-2) . . m Matching BioHub (Sections level changed) (top)
- 15:57, 3 July 2013 (diff | hist) . . (-4) . . m Matching BioHub (Sections level changed)
- 15:56, 3 July 2013 (diff | hist) . . (+731) . . Matching BioHub (Notes on SQL connection, subsections - →Implementation of SQL-based matching hub)
- 12:37, 3 July 2013 (diff | hist) . . (+76) . . Classification hub (+{{Stub}})
- 12:33, 3 July 2013 (diff | hist) . . (0) . . m BioUML wiki (→Community)
- 12:32, 3 July 2013 (diff | hist) . . (+17) . . BioUML wiki (+Databases)
- 12:31, 3 July 2013 (diff | hist) . . (+4) . . Defines.js
- 12:23, 3 July 2013 (diff | hist) . . (+3,949) . . Matching BioHub (Technical details and implementation via SqlBasedHub added)
- 12:04, 3 July 2013 (diff | hist) . . (+31) . . m Script viewpart (Link to Using JavaScript in BioUML)
- 11:27, 3 July 2013 (diff | hist) . . (+44) . . GeneXplain
- 11:00, 3 July 2013 (diff | hist) . . (+97) . . GeneXplain (Address added)
- 22:13, 2 July 2013 (diff | hist) . . (+19) . . m GTRD (Cosmetic - →Search capabilities)
- 18:19, 2 July 2013 (diff | hist) . . (+71) . . N Yury Kondrakhin (Created page with "Yury Kondrakhin, Ph.D. Researcher at Institute of Systems Biology.") (top)
- 18:18, 2 July 2013 (diff | hist) . . (+65) . . N Ruslan Sharipov (Created page with "Ruslan Sharipov. Researcher at Institute of Systems Biology.") (top)
- 14:22, 2 July 2013 (diff | hist) . . (+26) . . Document pane (+Tree-table document) (top)
- 14:20, 2 July 2013 (diff | hist) . . (+12) . . m GTRD
- 14:19, 2 July 2013 (diff | hist) . . (+27) . . m GTRD (de in GTRD link)
- 13:42, 2 July 2013 (diff | hist) . . (+7) . . m MGL (links - →MGL structure) (top)
- 13:40, 2 July 2013 (diff | hist) . . (+11) . . Template:Stub (top)
- 13:39, 2 July 2013 (diff | hist) . . (+33) . . m Cross cost grid layout (+stub message) (top)
- 13:39, 2 July 2013 (diff | hist) . . (+33) . . m Hierarchical layout (+stub message) (top)
- 13:38, 2 July 2013 (diff | hist) . . (+33) . . m Orthogonal layout (+stub message) (top)
- 13:38, 2 July 2013 (diff | hist) . . (+33) . . m Grid layout (+stub message) (top)
- 13:36, 2 July 2013 (diff | hist) . . (+21) . . GTRD ({{stub}} - →Web interface to database)
- 13:35, 2 July 2013 (diff | hist) . . (+72) . . GTRD (+tree-tables link)
- 13:32, 2 July 2013 (diff | hist) . . (+102) . . GTRD (Links to external databases)
- 13:30, 2 July 2013 (diff | hist) . . (+31) . . Tree-table (element type) (top)
- 13:28, 2 July 2013 (diff | hist) . . (+2,667) . . N Tree-table (element type) (Created page with "{{Element type|tree-table|ru.biosoft.treetable.TreeTableElement}} === Description === This element represents a mixture of table and the tree: each tree branch or leaf can be ...")
- 13:28, 2 July 2013 (diff | hist) . . (0) . . N File:Type-tree-table-example-web.png (top)
- 12:43, 1 July 2013 (diff | hist) . . (+1,899) . . N Classification hub (Created page with "'''Classification hub''' is a kind of BioHub which used to classify the genes into several groups. This BioHub type is defined in [[Biouml.plugins.enrichment (plugin)|biou...")
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