BioUML wiki

Welcome to BioUML wiki! Now it is the main web site for BioUML platform.

BioUML is an open source integrated Java platform for building virtual cell and virtual physiological human. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (Eclipse run time from IBM is used) allows to add new functionality using plug-ins.

Currently we have 1,022 articles.

For BioUML users BioUML overview BioUML workbench BioUML web edition Main features Download BioUML user interface Modelling Simulation Modular modeling Analyses & workflows Projects Analyses Workflows Galaxy R JavaScript File formats

For administrators/developers BioUML installation BioUML Development Kit Plugins Extension points Creating Galaxy tool Roadmap History Try BioUML web edition http://ie.biouml.org/bioumlweb (free) http://platform.genexplain.com (trial, commercial) Miscellaneous Tests Presentations Presentations (video, slides) from workshop "From virtual cell to virtual human and virtual patient"

Community News Forum BioStore Contributors BioUML_team geneXplain Editing this wiki To edit this wiki you have to register in BioStore. Consult the User's Guide for information on using the wiki software. Configuration settings list MediaWiki FAQ HTML-to-wiki converter

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