Difference between revisions of "Biouml.plugins.gtrd (plugin)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
| Line 6: | Line 6: | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.10 |
=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
| − | |||
*[[File:Default-analysis-icon.png]] [[Compare Experiments (analysis)|Compare Experiments]] | *[[File:Default-analysis-icon.png]] [[Compare Experiments (analysis)|Compare Experiments]] | ||
*[[File:Default-analysis-icon.png]] [[Compute profile thresholds (analysis)|Compute profile thresholds]] | *[[File:Default-analysis-icon.png]] [[Compute profile thresholds (analysis)|Compute profile thresholds]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Create flat files (analysis)|Create flat files]] | ||
*[[File:Default-analysis-icon.png]] [[Diff Encode (analysis)|Diff Encode]] | *[[File:Default-analysis-icon.png]] [[Diff Encode (analysis)|Diff Encode]] | ||
*[[File:Default-analysis-icon.png]] [[Gene features (analysis)|Gene features]] | *[[File:Default-analysis-icon.png]] [[Gene features (analysis)|Gene features]] | ||
*[[File:GTRD-Import-Encode-icon.png]] [[Import Encode (analysis)|Import Encode]] | *[[File:GTRD-Import-Encode-icon.png]] [[Import Encode (analysis)|Import Encode]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Import HOCOMOCO (analysis)|Import HOCOMOCO]] | ||
*[[File:Default-analysis-icon.png]] [[Join GTRD Tracks (analysis)|Join GTRD Tracks]] | *[[File:Default-analysis-icon.png]] [[Join GTRD Tracks (analysis)|Join GTRD Tracks]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Join GTRD clusters (analysis)|Join GTRD clusters]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Make meta tracks (analysis)|Make meta tracks]] | ||
*[[File:Default-analysis-icon.png]] [[Match Encode antibodies (analysis)|Match Encode antibodies]] | *[[File:Default-analysis-icon.png]] [[Match Encode antibodies (analysis)|Match Encode antibodies]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Merge peak callers (analysis)|Merge peak callers]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Merge peaks (analysis)|Merge peaks]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Open per TF view (analysis)|Open per TF view]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Open tracks for all TF (analysis)|Open tracks for all TF]] | ||
*[[File:Default-analysis-icon.png]] [[Predict and merge (analysis)|Predict and merge]] | *[[File:Default-analysis-icon.png]] [[Predict and merge (analysis)|Predict and merge]] | ||
*[[File:Default-analysis-icon.png]] [[Prepare Search by regulation (analysis)|Prepare Search by regulation]] | *[[File:Default-analysis-icon.png]] [[Prepare Search by regulation (analysis)|Prepare Search by regulation]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Prepare cluster to exp table (analysis)|Prepare cluster to exp table]] | ||
*[[File:Default-analysis-icon.png]] [[Search binding sites (analysis)|Search binding sites]] | *[[File:Default-analysis-icon.png]] [[Search binding sites (analysis)|Search binding sites]] | ||
*[[File:Default-analysis-icon.png]] [[Search regulated genes (analysis)|Search regulated genes]] | *[[File:Default-analysis-icon.png]] [[Search regulated genes (analysis)|Search regulated genes]] | ||
Revision as of 19:03, 13 February 2017
- ID
- biouml.plugins.gtrd
- Name
- GTRD
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
Contents |
Analysis methods
Analysis methods defined in this plugin:
Compare Experiments
- Compute profile thresholds
- Create flat files
- Diff Encode
- Gene features
Import Encode
- Import HOCOMOCO
- Join GTRD Tracks
- Join GTRD clusters
- Make meta tracks
- Match Encode antibodies
- Merge peak callers
- Merge peaks
- Open per TF view
- Open tracks for all TF
- Predict and merge
- Prepare Search by regulation
- Prepare cluster to exp table
- Search binding sites
- Search regulated genes
- Symmetry points
- Upgrade
- Validate Experiments
Perspectives
Perspectives defined in this plugin:
Host objects
JavaScript host objects defined in this plugin:
Reference types
Reference types defined in this plugin:
