Difference between revisions of "Ru.biosoft.analysis (plugin)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.10 |
=== Extension points === | === Extension points === | ||
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=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
| − | *[[Affymetrix normalization (analysis)|Affymetrix normalization]] | + | *[[File:Data-Affymetrix-normalization-icon.png]] [[Affymetrix normalization (analysis)|Affymetrix normalization]] |
| − | *[[Agilent normalization (analysis)|Agilent normalization]] | + | *[[File:Data-Agilent-normalization-icon.png]] [[Agilent normalization (analysis)|Agilent normalization]] |
| − | *[[Annotate table (analysis)|Annotate table]] | + | *[[File:Data-Annotate-diagram-icon.png]] [[Annotate diagram (analysis)|Annotate diagram]] |
| − | *[[CRC Analysis]] | + | *[[File:Data-Annotate-table-icon.png]] [[Annotate table (analysis)|Annotate table]] |
| − | *[[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] | + | *[[File:Default-analysis-icon.png]] [[CR cluster selector (analysis)|CR cluster selector]] |
| − | *[[Convert table (analysis)|Convert table]] | + | *[[File:Data-CRC-Analysis-icon.png]] [[CRC Analysis]] |
| − | *[[Copy folder (analysis)|Copy folder]] | + | *[[File:Default-analysis-icon.png]] [[Check quotas (analysis)|Check quotas]] |
| − | *[[Correlation Analysis]] | + | *[[File:Default-analysis-icon.png]] [[Clean up SQL database (analysis)|Clean up SQL database]] |
| − | *[[Create folder (analysis)|Create folder]] | + | *[[File:Data-Cluster-analysis-by-K-means-icon.png]] [[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] |
| − | *[[Export element (analysis)|Export element]] | + | *[[File:Data-Convert-table-icon.png]] [[Convert table (analysis)|Convert table]] |
| − | *[[Extend network (analysis)|Extend network]] | + | *[[File:Default-analysis-icon.png]] [[Copy data element (analysis)|Copy data element]] |
| − | *[[Filter table (analysis)|Filter table]] | + | *[[File:Default-analysis-icon.png]] [[Copy folder (analysis)|Copy folder]] |
| − | *[[Fold-Change calculation (analysis)|Fold-Change calculation]] | + | *[[File:Statistics-Correlation-Analysis-icon.png]] [[Correlation Analysis]] |
| − | *[[Hypergeometric analysis]] | + | *[[File:Data-Create-folder-icon.png]] [[Create folder (analysis)|Create folder]] |
| − | *[[Illumina normalization (analysis)|Illumina normalization]] | + | *[[File:Default-analysis-icon.png]] [[Diagram graph compare analysis]] |
| − | *[[Join diagrams (analysis)|Join diagrams]] | + | *[[File:Statistics-Differential-expression-with-DESeq-icon.png]] [[Differential expression with DESeq (analysis)|Differential expression with DESeq]] |
| − | *[[Join several tables (analysis)|Join several tables]] | + | *[[File:Admin-Export-element-icon.png]] [[Export element (analysis)|Export element]] |
| − | *[[Join table (analysis)|Join table]] | + | *[[File:Molecular-networks-Extend-network-icon.png]] [[Extend network (analysis)|Extend network]] |
| − | *[[Meta analysis]] | + | *[[File:Default-analysis-icon.png]] [[Filter duplicate rows (analysis)|Filter duplicate rows]] |
| − | *[[Polynomial Regression analysis]] | + | *[[File:Data-Filter-table-icon.png]] [[Filter table (analysis)|Filter table]] |
| − | *[[Select table columns (analysis)|Select table columns]] | + | *[[File:Statistics-Fold-Change-calculation-icon.png]] [[Fold-Change calculation (analysis)|Fold-Change calculation]] |
| − | *[[Up and Down Identification (analysis)|Up and Down Identification]] | + | *[[File:Default-analysis-icon.png]] [[Group table rows (analysis)|Group table rows]] |
| − | *[[Venn diagrams (analysis)|Venn diagrams]] | + | *[[File:Statistics-Hypergeometric-analysis-icon.png]] [[Hypergeometric analysis]] |
| + | *[[File:Data-Illumina-normalization-icon.png]] [[Illumina normalization (analysis)|Illumina normalization]] | ||
| + | *[[File:Molecular-networks-Join-diagrams-icon.png]] [[Join diagrams (analysis)|Join diagrams]] | ||
| + | *[[File:Data-Join-several-tables-icon.png]] [[Join several tables (analysis)|Join several tables]] | ||
| + | *[[File:Data-Join-table-icon.png]] [[Join table (analysis)|Join table]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Merge table columns (analysis)|Merge table columns]] | ||
| + | *[[File:Statistics-Meta-analysis-icon.png]] [[Meta analysis]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Plot bar chart (analysis)|Plot bar chart]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Plot pie chart (analysis)|Plot pie chart]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Plot scatter chart (analysis)|Plot scatter chart]] | ||
| + | *[[File:Statistics-Polynomial-Regression-analysis-icon.png]] [[Polynomial Regression analysis]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Quantile normalization (analysis)|Quantile normalization]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Remove unobservable molecules (analysis)|Remove unobservable molecules]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Select random rows (analysis)|Select random rows]] | ||
| + | *[[File:Data-Select-table-columns-icon.png]] [[Select table columns (analysis)|Select table columns]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Select top rows (analysis)|Select top rows]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Share molecules (analysis)|Share molecules]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Sign test (analysis)|Sign test]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Super annotate table (analysis)|Super annotate table]] | ||
| + | *[[File:Statistics-Table-imputation-icon.png]] [[Table imputation (analysis)|Table imputation]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Transform table (analysis)|Transform table]] | ||
| + | *[[File:Statistics-Up-and-Down-Identification-icon.png]] [[Up and Down Identification (analysis)|Up and Down Identification]] | ||
| + | *[[File:Data-Venn-diagrams-icon.png]] [[Venn diagrams (analysis)|Venn diagrams]] | ||
| + | |||
| + | === Host objects === | ||
| + | JavaScript [[Host object (extension point)|host objects]] defined in this plugin: | ||
| + | *[[Microarray (host object)|microarray]] | ||
| + | *[[Normalize (host object)|normalize]] | ||
| + | *[[Transform (host object)|transform]] | ||
=== Reference types === | === Reference types === | ||
[[Reference type]]s defined in this plugin: | [[Reference type]]s defined in this plugin: | ||
| + | *[[File:ReferenceType-CategoryType-icon.png]] [[Categories (reference type)|Categories]] | ||
*[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]] | *[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]] | ||
| − | *[[File:ReferenceType- | + | *[[File:ReferenceType-PathwayType-icon.png]] [[Pathways (reference type)|Pathways]] |
| − | + | ||
*[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]] | *[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]] | ||
| + | *[[File:ReferenceType-ProteinTableType-icon.png]] [[Proteins (reference type)|Proteins]] | ||
| + | *[[File:ReferenceType-SubstanceType-icon.png]] [[Substances (reference type)|Substances]] | ||
| + | *[[File:ReferenceType-TranscriptTableType-icon.png]] [[Transcripts (reference type)|Transcripts]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:ISB plugins]] | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 16:35, 12 March 2019
- ID
- ru.biosoft.analysis
- Name
- Common methods of data analysis plug-in
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
Contents |
[edit] Extension points
Extension points defined in this plugin:
[edit] Analysis methods
Analysis methods defined in this plugin:
Affymetrix normalization
Agilent normalization
Annotate diagram
Annotate table
CR cluster selector
CRC Analysis
- Check quotas
- Clean up SQL database
Cluster analysis by K-means
Convert table
- Copy data element
- Copy folder
Correlation Analysis
Create folder
- Diagram graph compare analysis
Differential expression with DESeq
Export element
Extend network
- Filter duplicate rows
Filter table
Fold-Change calculation
- Group table rows
Hypergeometric analysis
Illumina normalization
Join diagrams
Join several tables
Join table
- Merge table columns
Meta analysis
- Plot bar chart
- Plot pie chart
- Plot scatter chart
Polynomial Regression analysis
- Quantile normalization
- Remove unobservable molecules
- Select random rows
Select table columns
- Select top rows
- Share molecules
- Sign test
- Super annotate table
Table imputation
- Transform table
Up and Down Identification
Venn diagrams
[edit] Host objects
JavaScript host objects defined in this plugin:
[edit] Reference types
Reference types defined in this plugin:
