Difference between revisions of "Transform track to table (analysis)"

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(Automatic synchronization with BioUML)

Revision as of 19:00, 13 February 2017

Analysis title
Default-analysis-icon.png Transform track to table
Provider
Institute of Systems Biology
Class
TransformTrackToTable
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Create data matrix with sequence sample and/or values of variables that are dynamic properties of sites in track

Parameters:

  • Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
  • Table content – Select table content
  • Variable names – Select variable names
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Sequence sample type – Select sequence sample type
  • Specified length of sequence – Specify sequence length
  • Output table path – Path to the output table
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