Difference between revisions of "Transcriptome minimal unique length (analysis)"

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Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Transcriptome minimal unique length
Provider
Institute of Systems Biology
Class
TranscriptomeMinimalUniqueLength
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

[edit] Description

For each position in transcript find the shortest possible read length that can map uniquely to this position.

[edit] Parameters:

  • Transcript set – Transcript set
    • Annotation source – Source of gene annotation
    • Transcripts annotation track – Track with transcripts annotation in BED format
    • Genome sequence – Collection of chromosomal sequences
    • Ensembl – Ensembl database version
    • Transcript subset – Subset of transcripts used in this analysis
    • GTF file – GTF file
  • Only protein coding – Use only protein coding transcripts
  • Result path – Path to store result
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