Difference between revisions of "Search binding sites (analysis)"

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Revision as of 13:57, 19 August 2013

Analysis title
Default-analysis-icon.png Search binding sites
Provider
Institute of Systems Biology
Class
SearchBindingSites
Plugin
biouml.plugins.gtrd (GTRD)

Description

Search binding sites

Parameters:

  • preparedData (expert) – preparedData
  • Organism – Organism
  • Gene symbol or ID – Restrict search to single gene, enter 'Any' to search in all genes
  • Transcription factor – Transcription factor
  • ChIP-seq peak calling method – ChIP-seq peak calling method
  • Cell line – Cell line
  • Treatment – Treatment/condition
  • Max gene distance – Maximal distance from site to gene
  • Binding sites (expert) – Found transcription factor binding sites
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