SNPs in binding regions (analysis)

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Analysis title
Default-analysis-icon.png SNPs in binding regions
Provider
Institute of Systems Biology
Class
SNPInBindingRegions
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

This analysis calculates SNPs in binding regions

Parameters:

  • Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
  • SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
  • TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
  • Output table path – Path to the output table
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