Difference between revisions of "Quality control metrics (analysis)"

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==== Description ====
 
==== Description ====
Calculation of quality control metrics for assessing tracks from GTRD
+
Calculation of quality control metrics for assessing tracks from GTRD.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Path to folder with folders''' – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
 
* '''Path to folder with folders''' – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
 
* '''Folders names''' – Select folders names
 
* '''Folders names''' – Select folders names
 +
* '''Type of combined peaks''' – Type of combined peaks
 
* '''Minimal length of peaks''' – All peaks that are shorter than this threshold will be prolongated
 
* '''Minimal length of peaks''' – All peaks that are shorter than this threshold will be prolongated
 
* '''Maximal length of peaks''' – All peaks that are longer than this threshold will be truncated
 
* '''Maximal length of peaks''' – All peaks that are longer than this threshold will be truncated
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:GTRD (analyses group)]]
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[[Category:GTRD build (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Quality control metrics
Provider
Institute of Systems Biology
Class
QualityControlMetrics
Plugin
biouml.plugins.gtrd (GTRD)

[edit] Description

Calculation of quality control metrics for assessing tracks from GTRD.

[edit] Parameters:

  • Species – Select a taxonomical species
  • Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
  • Folders names – Select folders names
  • Type of combined peaks – Type of combined peaks
  • Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
  • Maximal length of peaks – All peaks that are longer than this threshold will be truncated
  • FPCM threshold – FPCM threshold
  • Do add auxiliary information – Do add auxiliary information (such as number of observed peaks without orphans)?
  • Path to output folder – Path to output folder
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