Microarray (host object)

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Revision as of 14:57, 16 May 2013 by BioUML wiki Bot (Talk | contribs)

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Host object name
microarray
Class
JavaScriptAnalysis
Plugin
ru.biosoft.analysis (Common methods of data analysis plug-in)

JavaScript host object

ScriptableObject microarray

Facade for data-manipulations

Functions:

  • TableDataCollection cluster(TableDataCollection experiment, String columns, String method, int clusterCount, String outputTablePath)
  • TableDataCollection correlation(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String dataSource, String resultType, String correlationType, double cutoff, double thresholdDown, double thresholdUp, boolean fdr, String outputTablePath)
  • TableDataCollection crc(TableDataCollection experiment, String columns, double cutoff, int chainsCount, int cycleCount, boolean invert, double outputTablePath)
  • TableDataCollection foldchange(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String type, String logarithmBase, String thresholdDown, double thresholdUp, double outputTablePath)
  • TableDataCollection hypergeom(TableDataCollection experiment[, TableDataCollection control], String experimentColumns[, String controlColumns], String outputType, String pvalue, double thresholdDown, double thresholdUp, double bv, double fdr, boolean isControlAveraged, boolean isDetailed[, boolean matchingCollection][, DataCollection keySource], String outputTablePath)
  • TableDataCollection regression(TableDataCollection experiment, String experimentColumns, String timePoints, int regressionPower, double pvalue, double thresholdDown, double thresholdUp, boolean fdr, String outputTablePath)
  • TableDataCollection updown(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String method, String outputType, String pvalue, double thresholdDown, double thresholdUp, double fdr, boolean outputTablePath)
  • void venn(TableDataCollection table1, TableDataCollection table2, TableDataCollection table3, boolean simple, String outputPath)
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