Difference between revisions of "Import HOCOMOCO (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
(One intermediate revision by one user not shown)
Line 9: Line 9:
  
 
==== Description ====
 
==== Description ====
Imports HOCOMOCO database from flat files
+
Imports HOCOMOCO database from flat files.
  
 
==== Parameters: ====
 
==== Parameters: ====
Line 16: Line 16:
 
* '''PWM flat file''' – Position weight matrix flat file
 
* '''PWM flat file''' – Position weight matrix flat file
 
* '''Thresholds table''' – Table with model thresholds
 
* '''Thresholds table''' – Table with model thresholds
 +
* '''Thresholds folder''' – Thresholds folder
 
* '''Uniprot matching table''' – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
 
* '''Uniprot matching table''' – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
 
* '''Resulting matrix collection''' – Path to resulting matrix collection
 
* '''Resulting matrix collection''' – Path to resulting matrix collection

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Import HOCOMOCO
Provider
Institute of Systems Biology
Class
ImportHocomoco
Plugin
biouml.plugins.gtrd (GTRD)

[edit] Description

Imports HOCOMOCO database from flat files.

[edit] Parameters:

  • PCM flat file – Position count matrix flat file
  • PWM flat file – Position weight matrix flat file
  • Thresholds table – Table with model thresholds
  • Thresholds folder – Thresholds folder
  • Uniprot matching table – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
  • Resulting matrix collection – Path to resulting matrix collection
  • Resulitng site model collection – Path to resulting site model collection
  • Resulting factor collection – Resulting factor collection
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox