Difference between revisions of "IPS motif discovery (analysis)"

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Discover motifs in the sequence set
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;Analysis title
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:[[File:Motif-discovery-IPS-motif-discovery-icon.png]] IPS motif discovery
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;Provider
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:[[Institute of Systems Biology]]
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;Class
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:{{Class|ru.biosoft.bsa.analysis.IPSMotifDiscoveryAnalysis}}
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;Plugin
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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==== Description ====
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Discover motifs in the sequence set.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Motif discovery (analyses group)]]
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[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Motif-discovery-IPS-motif-discovery-icon.png IPS motif discovery
Provider
Institute of Systems Biology
Class
IPSMotifDiscoveryAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Discover motifs in the sequence set.

[edit] Parameters:

  • Input Sequences – Input Sequences
  • Initial matrices – Frequecy matrices that will be used as initial approximation
  • Search for sub motifs – Whether to search for sub motifs
  • Max iterations – Maximum number of iterations
  • Min number of sequences – Minimal number of sequences to make a matrix
  • Window size – Size of window around binding site for calculation of local background
  • Critical IPS threshold – Critical IPS threshold
  • Output matrix collection – Collection where constructed matrices will be saved
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