Difference between revisions of "IPS motif discovery (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Motif-discovery-IPS-motif-discovery-icon.png]] IPS motif discovery |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.IPSMotifDiscoveryAnalysis}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Discover motifs in the sequence set | + | Discover motifs in the sequence set. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Motif discovery (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
IPS motif discovery
- Provider
- Institute of Systems Biology
- Class
IPSMotifDiscoveryAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Discover motifs in the sequence set.
[edit] Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
