Difference between revisions of "IPS motif discovery (analysis)"
From BioUML platform
(Added 'Autogenerated pages' category) |
m (Protected "IPS motif discovery (analysis)": Autogenerated page ([edit=sysop] (indefinite))) |
Revision as of 16:27, 4 April 2013
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
