Difference between revisions of "IPS motif discovery (analysis)"

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Revision as of 16:27, 4 April 2013

Discover motifs in the sequence set

Parameters:

  • Input Sequences – Input Sequences
  • Initial matrices – Frequecy matrices that will be used as initial approximation
  • Search for sub motifs – Whether to search for sub motifs
  • Max iterations – Maximum number of iterations
  • Min number of sequences – Minimal number of sequences to make a matrix
  • Window size – Size of window around binding site for calculation of local background
  • Critical IPS threshold – Critical IPS threshold
  • Output matrix collection – Collection where constructed matrices will be saved
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