Difference between revisions of "IPS motif discovery (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-IPS-motif-discovery-icon.png]] IPS motif discovery
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:[[File:IPS-motif-discovery-analysis-icon.png]] IPS motif discovery
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]

Revision as of 12:32, 16 May 2013

Analysis title
File:IPS-motif-discovery-analysis-icon.png IPS motif discovery
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Discover motifs in the sequence set

Parameters:

  • Input Sequences – Input Sequences
  • Initial matrices – Frequecy matrices that will be used as initial approximation
  • Search for sub motifs – Whether to search for sub motifs
  • Max iterations – Maximum number of iterations
  • Min number of sequences – Minimal number of sequences to make a matrix
  • Window size – Size of window around binding site for calculation of local background
  • Critical IPS threshold – Critical IPS threshold
  • Output matrix collection – Collection where constructed matrices will be saved
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