Difference between revisions of "Fold-Change calculation (analysis)"

Latest revision as of 18:15, 9 December 2020

Calculates fold-change values.

Experiment – Table with experimental(test) data
- Table – Table path
- Columns – List of columns to use
Control – Table with control data
- Table – Table path
- Columns – List of columns to use
Data handling – Type of fold-change: average none, average control, average experiment, average all and one to one
type – type
inputLogarithmBase – inputLogarithmBase
outputLogarithmBase – outputLogarithmBase
Value boundaries (expert) – All values outside these boundaries will be treated as outliers
- Lower boundary – Input values below this threshold will be ignored
- Upper boundary – Input values above this threshold will be ignored
Output table – Output table
Output histogram – If specified, histogram will be created showing fold-change distribution

@@ Line 1: / Line 1: @@
 ;Analysis title
-:Fold-Change calculation
+:[[File:Statistics-Fold-Change-calculation-icon.png]] Fold-Change calculation
 ;Provider
 :[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.analysis.FoldChange}}
+;Plugin
+:[[Ru.biosoft.analysis (plugin)|ru.biosoft.analysis (Common methods of data analysis plug-in)]]
 ==== Description ====
-Calculates fold-change values
+Calculates fold-change values.
 ==== Parameters: ====
@@ Line 16: / Line 20: @@
 ** '''Columns''' – List of columns to use
 * '''Data handling''' – Type of fold-change: average none, average control, average experiment, average all and one to one
-* '''Input logarithm base''' – Logarithm base of input data
+* '''type''' – type
-* '''Result logarithm base''' – Logarithm base of result
+* '''inputLogarithmBase''' – inputLogarithmBase
+* '''outputLogarithmBase''' – outputLogarithmBase
 * '''Value boundaries''' (expert) – All values outside these boundaries will be treated as outliers
 ** '''Lower boundary''' – Input values below this threshold will be ignored