Difference between revisions of "Differential expression with DESeq (analysis)"

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(Automatic synchronization with BioUML)
 
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;Analysis title
 
;Analysis title
:[[File:Default-analysis-icon.png]] Differential expression with DESeq
+
:[[File:Statistics-Differential-expression-with-DESeq-icon.png]] Differential expression with DESeq
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
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==== Description ====
 
==== Description ====
Differential expression with DESeq
+
Differential expression with DESeq.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
 +
* '''DESeq version''' – Set version of the algorithm
 
* '''Experiment samples''' – Experiment samples
 
* '''Experiment samples''' – Experiment samples
 
** '''Table''' – Table path
 
** '''Table''' – Table path
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** '''Table''' – Table path
 
** '''Table''' – Table path
 
** '''Columns''' – List of columns to use
 
** '''Columns''' – List of columns to use
* '''testsTable''' – testsTable
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* '''Output table''' – Path for output table
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Statistics-Differential-expression-with-DESeq-icon.png Differential expression with DESeq
Provider
Institute of Systems Biology
Class
DESeq
Plugin
ru.biosoft.analysis (Common methods of data analysis plug-in)

[edit] Description

Differential expression with DESeq.

[edit] Parameters:

  • DESeq version – Set version of the algorithm
  • Experiment samples – Experiment samples
    • Table – Table path
    • Columns – List of columns to use
  • Control samples – Control samples
    • Table – Table path
    • Columns – List of columns to use
  • Output table – Path for output table
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