ChIP-Seq peaks clusterization (analysis)

From BioUML platform
Revision as of 12:19, 25 August 2015 by BioUML wiki Bot (Talk | contribs)

Jump to: navigation, search
Analysis title
Default-analysis-icon.png ChIP-Seq peaks clusterization
Provider
Institute of Systems Biology
Class
ChIPSeqPeaksClusterization
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

clusterization of ChIP-Seq peaks ont the basis of peaks characteristics

Parameters:

  • Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
  • Type of data transformation – Type of data transformation
  • Number of clusters – Number of clusters
  • Do add numbers of overlaps – Do add numbers of overlaps to the set of peak characteristics?
  • Path to output folder – Output folder will be created under this location when it doesn't exist
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox