Difference between revisions of "Biouml.plugins.ensembl (plugin)"

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:biouml.plugins.ensembl
 
:biouml.plugins.ensembl
 
;Name
 
;Name
:Support for Ensembl using EnsJ
+
:Support for Ensembl database and Ensembl-specific analyses
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Version
 
;Version
:0.9.4
+
:0.9.10
  
 
=== Analysis methods ===
 
=== Analysis methods ===
 
Analysis methods defined in this plugin:
 
Analysis methods defined in this plugin:
*[[Annotate track with genes (analysis)|Annotate track with genes]]
+
*[[File:BSA-Annotate-track-with-genes-icon.png]] [[Annotate track with genes (analysis)|Annotate track with genes]]
*[[Convert table via homology (analysis)|Convert table via homology]]
+
*[[File:Data-Convert-table-via-homology-icon.png]] [[Convert table via homology (analysis)|Convert table via homology]]
*[[Gene overlap statistics (analysis)|Gene overlap statistics]]
+
*[[File:Default-analysis-icon.png]] [[Gene overlap statistics (analysis)|Gene overlap statistics]]
*[[Mutation effect (analysis)|Mutation effect]]
+
*[[File:BSA-Get-transcripts-track-icon.png]] [[Get transcripts track (analysis)|Get transcripts track]]
*[[Site distribution (analysis)|Site distribution]]
+
*[[File:Default-analysis-icon.png]] [[Import ensembl homology (analysis)|Import ensembl homology]]
*[[Track to gene set (analysis)|Track to gene set]]
+
*[[File:BSA-Mutation-effect-icon.png]] [[Mutation effect (analysis)|Mutation effect]]
 +
*[[File:BSA-Prepare-GTF-annotation-icon.png]] [[Prepare GTF annotation (analysis)|Prepare GTF annotation]]
 +
*[[File:BSA-Read-counter-icon.png]] [[Read counter (analysis)|Read counter]]
 +
*[[File:BSA-SNP-matching-icon.png]] [[SNP matching (analysis)|SNP matching]]
 +
*[[File:Default-analysis-icon.png]] [[Site distribution (analysis)|Site distribution]]
 +
*[[File:BSA-Track-to-gene-set-icon.png]] [[Track to gene set (analysis)|Track to gene set]]
 +
 
 +
=== Host objects ===
 +
JavaScript [[Host object (extension point)|host objects]] defined in this plugin:
 +
*[[Ensembl (host object)|ensembl]]
  
 
=== Reference types ===
 
=== Reference types ===
 
[[Reference type]]s defined in this plugin:
 
[[Reference type]]s defined in this plugin:
 +
*[[File:ReferenceType-EnsemblGeneTableType-icon.png]] [[Genes - Ensembl|Genes: Ensembl]]
 +
*[[File:ReferenceType-EntrezGeneTableType-icon.png]] [[Genes - Entrez|Genes: Entrez]]
 +
*[[File:ReferenceType-GenBankGeneTableType-icon.png]] [[Genes - GenBank|Genes: GenBank]]
 +
*[[File:ReferenceType-GeneSymbolTableType-icon.png]] [[Genes - Gene symbol|Genes: Gene symbol]]
 +
*[[File:ReferenceType-UniGeneTableType-icon.png]] [[Genes - Unigene|Genes: Unigene]]
 
*[[File:ReferenceType-AffymetrixProbeTableType-icon.png]] [[Probes - Affymetrix|Probes: Affymetrix]]
 
*[[File:ReferenceType-AffymetrixProbeTableType-icon.png]] [[Probes - Affymetrix|Probes: Affymetrix]]
 
*[[File:ReferenceType-AgilentProbeTableType-icon.png]] [[Probes - Agilent|Probes: Agilent]]
 
*[[File:ReferenceType-AgilentProbeTableType-icon.png]] [[Probes - Agilent|Probes: Agilent]]
 
*[[File:ReferenceType-IlluminaProbeTableType-icon.png]] [[Probes - Illumina|Probes: Illumina]]
 
*[[File:ReferenceType-IlluminaProbeTableType-icon.png]] [[Probes - Illumina|Probes: Illumina]]
*[[File:ReferenceType-EnsemblGeneTableType-icon.png]] [[Genes - Ensembl|Genes: Ensembl]]
 
 
*[[File:ReferenceType-EnsemblProteinTableType-icon.png]] [[Proteins - Ensembl|Proteins: Ensembl]]
 
*[[File:ReferenceType-EnsemblProteinTableType-icon.png]] [[Proteins - Ensembl|Proteins: Ensembl]]
*[[File:ReferenceType-EnsemblTranscriptTableType-icon.png]] [[Transcripts - Ensembl|Transcripts: Ensembl]]
 
*[[File:ReferenceType-EntrezGeneTableType-icon.png]] [[Genes - Entrez|Genes: Entrez]]
 
*[[File:ReferenceType-GenBankGeneTableType-icon.png]] [[Genes - GenBank|Genes: GenBank]]
 
 
*[[File:ReferenceType-GenBankProteinType-icon.png]] [[Proteins - GenBank|Proteins: GenBank]]
 
*[[File:ReferenceType-GenBankProteinType-icon.png]] [[Proteins - GenBank|Proteins: GenBank]]
*[[File:ReferenceType-GeneSymbolTableType-icon.png]] [[Genes - Gene symbol|Genes: Gene symbol]]
 
 
*[[File:ReferenceType-IPIProteinTableType-icon.png]] [[Proteins - IPI|Proteins: IPI]]
 
*[[File:ReferenceType-IPIProteinTableType-icon.png]] [[Proteins - IPI|Proteins: IPI]]
*[[File:ReferenceType-RefSeqGeneTableType-icon.png]] [[Genes - RefSeq|Genes: RefSeq]]
+
*[[File:ReferenceType-NCBIProteinType-icon.png]] [[Proteins - NCBI|Proteins: NCBI]]
 
*[[File:ReferenceType-RefSeqProteinTableType-icon.png]] [[Proteins - RefSeq|Proteins: RefSeq]]
 
*[[File:ReferenceType-RefSeqProteinTableType-icon.png]] [[Proteins - RefSeq|Proteins: RefSeq]]
*[[File:ReferenceType-RefSeqTranscriptTableType-icon.png]] [[Transcripts - RefSeq|Transcripts: RefSeq]]
 
*[[File:ReferenceType-UniGeneTableType-icon.png]] [[Genes - Unigene|Genes: Unigene]]
 
 
*[[File:ReferenceType-UniprotProteinTableType-icon.png]] [[Proteins - UniProt|Proteins: UniProt]]
 
*[[File:ReferenceType-UniprotProteinTableType-icon.png]] [[Proteins - UniProt|Proteins: UniProt]]
 +
*[[File:ReferenceType-EnsemblTranscriptTableType-icon.png]] [[Transcripts - Ensembl|Transcripts: Ensembl]]
 +
*[[File:ReferenceType-RefSeqTranscriptTableType-icon.png]] [[Transcripts - RefSeq|Transcripts: RefSeq]]
  
 
[[Category:Plugins]]
 
[[Category:Plugins]]
 
[[Category:ISB plugins]]
 
[[Category:ISB plugins]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 16:35, 12 March 2019

ID
biouml.plugins.ensembl
Name
Support for Ensembl database and Ensembl-specific analyses
Provider
Institute of Systems Biology
Version
0.9.10

[edit] Analysis methods

Analysis methods defined in this plugin:

[edit] Host objects

JavaScript host objects defined in this plugin:

[edit] Reference types

Reference types defined in this plugin:

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