Transform track to table (analysis)

Analysis title

Transform track to table

Provider

Institute of Systems Biology

Class

TransformTrackToTable

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Create data matrix with sequence sample and/or values of variables that are dynamic properties of sites in track

Parameters:

• Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
• Table content – Select table content
• Variable names – Select variable names
• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Sequence sample type – Select sequence sample type
• Specified length of sequence – Specify sequence length
• Output table path – Path to the output table