BuildASiteOffsetTable (analysis)
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Revision as of 12:21, 25 August 2015 by BioUML wiki Bot (Talk | contribs)
- Analysis title
BuildASiteOffsetTable
- Provider
- Institute of Systems Biology
- Class
BuildASiteOffsetTable- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Build A site offset table on the length of the fragment
Parameters:
- BAM files – BAM files with genomic alignments
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- Transcript overhangs – Transcript overhangs
- Strand specific – In strand specific protocol reads can come only from positive strand of transcript
- A site offset Table – table: length - offset
