IPS motif discovery (analysis)
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Revision as of 10:50, 7 May 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
IPS motif discovery
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
