Difference between revisions of "Transform track to table (analysis)"
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Revision as of 19:00, 13 February 2017
- Analysis title
Transform track to table
- Provider
- Institute of Systems Biology
- Class
TransformTrackToTable- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Create data matrix with sequence sample and/or values of variables that are dynamic properties of sites in track
Parameters:
- Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
- Table content – Select table content
- Variable names – Select variable names
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Sequence sample type – Select sequence sample type
- Specified length of sequence – Specify sequence length
- Output table path – Path to the output table
