Difference between revisions of "SNP regions in genome (analysis)"

Latest revision as of 13:38, 17 June 2013

Analysis title

SNP regions in genome

Provider

Institute of Systems Biology

Class

SNPRegionsInGenome

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

This analysis finds SNP regions in genome

[edit] Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
• SNP region length – Length of each reference region
• Output table path – Path to the output table