Difference between revisions of "SNP matching (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
Revision as of 12:32, 16 May 2013
- Analysis title
- File:SNP-matching-analysis-icon.png SNP matching
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like 'rs11111111'
Parameters:
- Table – Table of source genes
- Species – Taxonomical species
- 5' region size – Include 5' region (promoter) of given size in bp
- 3' region size – Include 3' region of given size in bp
- Output non-matched – Whether to include in output table and track SNP's which were not matched to any gene
- Column to copy – Name of additional column to be copied to created genes table
- Aggregator – Operation to perform on column values if several SNP's matched to single gene ('minimum','maximum','sum','average')
- Output track – Path to output track
- Output SNP table – Path to output table with additional annotation
- Output genes table – Path to output table containing all the genes matched to SNPs
