Difference between revisions of "IPS motif discovery (analysis)"
From BioUML platform
(Provider information added) |
(Adding provider-specific categories) |
||
| Line 20: | Line 20: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
[[Category:BSA (analyses group)]] | [[Category:BSA (analyses group)]] | ||
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 11:07, 19 April 2013
- Analysis title
- IPS motif discovery
- Provider
- Institute of Systems Biology
Description
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
