Difference between revisions of "IPS motif discovery (analysis)"
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| + | :[[Institute of Systems Biology]] | ||
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| + | ==== Description ==== | ||
Discover motifs in the sequence set | Discover motifs in the sequence set | ||
Revision as of 15:40, 18 April 2013
- Analysis title
- IPS motif discovery
- Provider
- Institute of Systems Biology
Description
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
