Difference between revisions of "Cluster by shortest path (analysis)"
From BioUML platform
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:[[geneXplain GmbH]] | :[[geneXplain GmbH]] | ||
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| + | :{{Class|biouml.plugins.keynodes.ShortestPathClustering}} | ||
;Plugin | ;Plugin | ||
:[[Biouml.plugins.keynodes (plugin)|biouml.plugins.keynodes (Master regulator node analysis plugin)]] | :[[Biouml.plugins.keynodes (plugin)|biouml.plugins.keynodes (Master regulator node analysis plugin)]] | ||
Revision as of 11:15, 31 May 2013
- Analysis title
Cluster by shortest path
- Provider
- geneXplain GmbH
- Class
ShortestPathClustering- Plugin
- biouml.plugins.keynodes (Master regulator node analysis plugin)
Description
This analysis allows you to make a cluster of genes/molecules upstream or downstream or both by taking reactions and all intermediate molecules from a specified search collection
Parameters:
- Molecules collection – Input the collection of molecules/genes
- Input size (expert) – Size of input list
- Search direction – Direction to perform search in (either upstream, downstream reactions or both directions)
- Max radius – Maximal search radius
- Display intermediate molecules – Output the diagram with the direct reactions and all intermediate molecules
- Search collection – Collection containing reactions
- Species – Species to which analysis should be confined
- Output name – Output name.
