Difference between revisions of "IPS motif discovery (analysis)"
From BioUML platform
(Plugin name added) |
(Link to plugin page) |
||
| Line 4: | Line 4: | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Plugin | ;Plugin | ||
| − | :ru.biosoft.bsa (Bio-sequences analyses plugin) | + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] |
==== Description ==== | ==== Description ==== | ||
Revision as of 10:50, 7 May 2013
- Analysis title
IPS motif discovery
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
